Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009825.1 Corchorus capsularis cultivar CVL-1 contig09846, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130985

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--31
2
15.5
2
100
0
62
51
0
0
48
1.00
9127--9189
34
1.9
33
90
6
101
28
7
14
49
1.71
10825--10922
51
1.9
52
95
2
180
21
33
9
35
1.85
11601--11805
98
2.1
99
97
1
385
31
2
14
52
1.54
13882--13924
16
2.6
17
86
13
56
34
0
0
65
0.93
14202--14264
33
1.9
33
83
6
83
12
36
39
11
1.79
14934--14975
13
3.2
13
89
3
57
0
19
0
80
0.70
14934--14975
7
6.3
7
86
10
52
0
19
0
80
0.70
21472--21499
2
14.0
2
100
0
56
50
0
0
50
1.00
23363--23403
17
2.2
17
87
12
55
60
4
4
29
1.38
25642--25689
24
2.0
24
100
0
96
25
29
16
29
1.97
32268--32295
3
9.3
3
100
0
56
0
32
0
67
0.91
32350--32379
9
3.3
9
95
0
51
40
10
36
13
1.78
44364--44425
2
33.5
2
78
15
53
48
6
0
45
1.28
45754--45790
14
2.5
16
79
20
53
32
0
18
48
1.49
52225--52306
29
2.8
29
83
3
92
41
14
17
26
1.88
52682--52727
24
1.9
24
86
0
65
34
32
13
19
1.90
53716--53797
29
2.8
29
81
7
85
24
17
17
41
1.89
54728--54811
35
2.4
36
86
7
120
58
15
3
22
1.53
55884--55909
12
2.2
12
100
0
52
42
0
23
34
1.54
60883--60913
13
2.4
13
100
0
62
54
6
6
32
1.51
62343--62437
44
2.2
44
92
0
154
29
15
21
33
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66980--67004
13
1.9
13
100
0
50
72
0
0
28
0.86
72829--72860
7
4.6
7
100
0
64
87
12
0
0
0.54
73047--73082
11
3.4
11
92
3
56
47
11
0
41
1.39
74854--74892
20
1.9
20
89
5
60
58
7
2
30
1.39
74899--75055
74
2.1
74
89
4
237
42
8
27
21
1.83
75139--75169
2
15.0
2
93
6
53
48
0
3
48
1.17
86768--86802
16
2.1
18
89
10
56
65
17
0
17
1.27
86935--86969
2
18.0
2
94
5
63
51
0
0
48
1.00
86932--86984
8
7.0
7
85
14
54
52
0
1
45
1.11
89949--89987
2
19.5
2
94
0
69
46
0
2
51
1.14
102432--102560
67
2.0
65
92
3
213
46
10
20
22
1.81
111313--111346
5
6.8
5
100
0
68
41
20
0
38
1.53
112245--112283
2
21.5
2
80
19
50
51
0
0
48
1.00
113971--114015
23
2.0
23
86
0
63
35
20
31
13
1.91
115853--115888
16
2.2
17
95
5
65
22
2
0
75
0.94
117716--117797
6
14.5
6
89
7
104
0
0
17
82
0.66
117712--117789
16
4.8
16
80
19
99
0
0
17
82
0.68
117704--117800
5
19.6
5
87
12
107
0
0
17
82
0.67
117702--117799
16
6.1
15
77
13
88
0
0
18
81
0.69
124232--124262
1
31.0
1
100
0
62
0
0
0
100
0.00

Tables:   1

The End!