Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01009831.1 Corchorus capsularis cultivar CVL-1 contig09852, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 69859
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Found at i:26090 original size:22 final size:22
Alignment explanation
Indices: 26064--26107 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
26054 TGTGTGAAAT
26064 ATATCATTCATTGTTGAGTGTA
1 ATATCATTCATTGTTGAGTGTA
26086 ATATCATTCATTGTTGAGTGTA
1 ATATCATTCATTGTTGAGTGTA
26108 GTACTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.09, G:0.18, T:0.45
Consensus pattern (22 bp):
ATATCATTCATTGTTGAGTGTA
Found at i:41854 original size:2 final size:2
Alignment explanation
Indices: 41847--41880 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
41837 TTGATAAAAC
41847 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
41881 AAAGAGGGTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:43538 original size:2 final size:2
Alignment explanation
Indices: 43531--43566 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
43521 CTTTTGACCA
43531 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
43567 AATACCATCA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:49020 original size:22 final size:22
Alignment explanation
Indices: 48979--49020 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
48969 ATGAATATTT
* *
48979 TGTTCTTTATTGTTTTCTTTCC
1 TGTTCTTTATTGTCTGCTTTCC
*
49001 TGTTCTTTTTTGTCTGCTTT
1 TGTTCTTTATTGTCTGCTTT
49021 TGTCATTTAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.02, C:0.17, G:0.12, T:0.69
Consensus pattern (22 bp):
TGTTCTTTATTGTCTGCTTTCC
Found at i:54614 original size:28 final size:27
Alignment explanation
Indices: 54573--54628 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 27
54563 ACATTATTAG
54573 TTTTTGGAGAATGAATTAACCTTAACT
1 TTTTTGGAGAATGAATTAACCTTAACT
* *
54600 TTTTTGAGATAATGAATTAACCTTGACT
1 TTTTTG-GAGAATGAATTAACCTTAACT
54628 T
1 T
54629 AATTCTTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 6 0.23
28 20 0.77
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (27 bp):
TTTTTGGAGAATGAATTAACCTTAACT
Found at i:54929 original size:20 final size:19
Alignment explanation
Indices: 54896--54934 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
54886 AATTACATTT
*
54896 TTTTTTCTTGACTTATTAC
1 TTTTTTCTTAACTTATTAC
*
54915 TTTTTTCTCTAACTTTTTAC
1 TTTTTTCT-TAACTTATTAC
54935 GTTGTATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.15, C:0.18, G:0.03, T:0.64
Consensus pattern (19 bp):
TTTTTTCTTAACTTATTAC
Found at i:55032 original size:29 final size:30
Alignment explanation
Indices: 54971--55043 Score: 96
Period size: 30 Copynumber: 2.4 Consensus size: 30
54961 GCTAAATACC
*
54971 CAAAAAAATCCTTTATGTTTTTGTCTTGGA
1 CAAAATAATCCTTTATGTTTTTGTCTTGGA
55001 CAAAATAATCCTTTATGTTTTT-T-TTGGTA
1 CAAAATAATCCTTTATGTTTTTGTCTTGG-A
*
55030 CAAATTAATTCCTT
1 CAAAATAA-TCCTT
55044 ACGTTTCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 4 0.10
29 9 0.23
30 26 0.67
ACGTcount: A:0.30, C:0.14, G:0.10, T:0.47
Consensus pattern (30 bp):
CAAAATAATCCTTTATGTTTTTGTCTTGGA
Found at i:57064 original size:322 final size:321
Alignment explanation
Indices: 56475--60064 Score: 4588
Period size: 322 Copynumber: 11.1 Consensus size: 321
56465 AATTATTACA
* * * * **
56475 CAATTTTTTGCCAGAATACTCAGAAAAATATATAATTCAATGCCAAAAATATTAACGGGGTTTTC
1 CAATTTTTTGCCACAATACACAGAAAAAAATATAATTCAATGCCAAAAATATTGACGGACTTTTC
* *
56540 ACGCTTCTAATATCGTTTTTTCATTTTTTTCTCCGAATTAATTTCTAATTAAATAGAAACAAGAT
66 ACGCTTCTAATATCGTTTTTCCA-TTTTTT-TCCGAATTAATTTCTAATTAAATCGAAACAAGAT
* * * *
56605 TCAGATGCTCGTAAAAACAAATCCTTATATCCAACATTGCTGAGATTTGGTTCGATGAATATAGA
129 TGAGATGCTCGAAAAAACAAATCCTTACATCCAATATTGCTGAGATTTGGTTCGATGAATATAGA
* * *
56670 TATTTCAAGGAGTCTTTGTGCAAAAAATTATGCAAAATTGAGCCGAGGCTTCGGAACGCGGTTTT
194 TATTTCAAGGAGTCTTTGTGCAAAAAATCATGCAAAATTGAGCCGGGGCTTCGGAACGCGTTTTT
* * * *
56735 AGCCAAAAACCGTGATGGTAAGTACGCAATTTTGACTAAAATCTGATCCAAAAATTTTTTTCT
259 AGCCAAAAACCGTGATGGTTAGTACACAATTTTGACTAAAAACTGACCCAAAAATTTTTTTCT
* *
56798 CAA-TTTTTGCCACAATACACTGAAAAAAATATAATTCAATGCCATAAATATTGACGGACTTTTC
1 CAATTTTTTGCCACAATACACAGAAAAAAATATAATTCAATGCCAAAAATATTGACGGACTTTTC
*
56862 ACACTTCTAATATCGTTTTTCCAATTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGAT
66 ACGCTTCTAATATCGTTTTTCC-A-TTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGAT
*
56927 TGAGATGCTCGAAAAAACAAATCCTTACATCCAATATTGCTGAGATTTGGTTCGATGAATATATA
129 TGAGATGCTCGAAAAAACAAATCCTTACATCCAATATTGCTGAGATTTGGTTCGATGAATATAGA
* * * * * *
56992 TATTTCAAGGAGTTTTTGCGCCAAAAATCATGCAAAATTGAGCCAGGTCTCCGGAACGCGTTTTT
194 TATTTCAAGGAGTCTTTGTGCAAAAAATCATGCAAAATTGAGCCGGGGCTTCGGAACGCGTTTTT
* * * *
57057 AGCCAAAAACCGT-ACTGGTTAGTACACAATTTCGGCTAAAGACTGACCCAAAAATTTTTATCT
259 AGCCAAAAACCGTGA-TGGTTAGTACACAATTTTGACTAAAAACTGACCCAAAAATTTTTTTCT
* * * *
57120 CAA-TTTTTGCCATAATACACAGAGAAAATATATATTTCAATGCC-AAAATATTGACGGGCTTTT
1 CAATTTTTTGCCACAATACACAGA-AAAAAATATAATTCAATGCCAAAAATATTGACGGACTTTT
* * * *
57183 CACGTTTTTAATATCGTTTTTCCAATTTTTTTCCGAATTAATTTCTAATTAAATTGAAAGAAGAT
65 CACGCTTCTAATATCGTTTTTCC-ATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGAT
** *
57248 TGAGATGCTCGAAAACGCAAATCCTTATC-TCCAATATTGCT-ATGATTTTGTTCGATTAATATA
129 TGAGATGCTCGAAAAAACAAATCCTTA-CATCCAATATTGCTGA-GATTTGGTTCG---------
* * * * * *
57311 TATATATATATATATATTTCAAGGAGTTTTTGCGCTAAAAATCATGGAAAATTGAGCCGGGG-TT
183 -AT-GA-ATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATGCAAAATTGAGCCGGGGCTT
* *
57375 CCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAAGTACACAATTTTGGCTAAAAACTGACCC
245 -CGGAACGCGTTTTTAGCCAAAAACCGTGATGGTT-AGTACACAATTTTGACTAAAAACTGACCC
57440 AAAAATTTTTTTCT
308 AAAAATTTTTTTCT
* * *
57454 CAATTTTTTGCCACAACAAACAGAAAATATATATAATTCAATGCCAAAAATATTGACGGACTTTT
1 CAATTTTTTGCCACAATACACAGAAAA-AAATATAATTCAATGCCAAAAATATTGACGGACTTTT
*
57519 CACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTAATTTCTAACTAAATCGAAACAAGATT
65 CACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATT
* *
57584 GAGATACTCGAAAAAACAAATCCTTACATCCAATATTGCTGAGATTTGGTTCAATGAATATAGAT
130 GAGATGCTCGAAAAAACAAATCCTTACATCCAATATTGCTGAGATTTGGTTCGATGAATATAGAT
* * * * *
57649 ATTTCAAGGAGTCTTTGCGCCAAAATTGATGCAAAATTGAGCCGGGGCTTCGGATCGCGTTTTTA
195 ATTTCAAGGAGTCTTTGTGCAAAAAATCATGCAAAATTGAGCCGGGGCTTCGGAACGCGTTTTTA
** * *
57714 GCCAAAAACTATGATGGTTAGTACAGAATTTTGGCTAAAAACTGA-CCAGAAAATTTTTTTCT
260 GCCAAAAACCGTGATGGTTAGTACACAATTTTGACTAAAAACTGACCCA-AAAATTTTTTTCT
* * * ** *
57776 CAATTTTTTGCCACAATAAACAG-AATATATATAATTCAATGCCAAAAATATTGACAAAATTTTC
1 CAATTTTTTGCCACAATACACAGAAAAAAATATAATTCAATGCCAAAAATATTGACGGACTTTTC
* * **
57840 ACGTTTCTAATTTCGTTTTTCTTTTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATT
66 ACGCTTCTAATATCGTTTTTC-CATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATT
* ** *
57905 GAGATGCTCGAAAAAACAAATCCTTATATCCAATATTGCTGAGATTTGGTTCCCTGAATATATAT
130 GAGATGCTCGAAAAAACAAATCCTTACATCCAATATTGCTGAGATTTGGTTCGATGAATATAGAT
* * * * *
57970 ATTTCAAGGAGTATTTGTGCAAAAAATCATGCAAAATTGAGTCGAGGCTCCGAAACGCGTTTTTA
195 ATTTCAAGGAGTCTTTGTGCAAAAAATCATGCAAAATTGAGCCGGGGCTTCGGAACGCGTTTTTA
* * * **
58035 GCTAAAAACCGTGATGGTTAGTTCACAATTTCTG-CTAAAAACTGTCCCGAAATTTTTGTTTTTC
260 GCCAAAAACCGTGATGGTTAGTACACAATTT-TGACTAAAAACTGACCC-AAA-AATT-TTTTTC
58099 T
321 T
** * * * * *
58100 CAA-TTTTTGCCACAATACTTAGAGAAAATATATATTTCAATGCTAAAAATATTGACAGACATTT
1 CAATTTTTTGCCACAATACACAGA-AAAAAATATAATTCAATGCCAAAAATATTGACGGACTTTT
* * *
58164 AACGCTTCTAATATCGTTTTTCCATTTTTTT--GAATTAATTTCTATTTAAATCGAAACAAGAAT
65 CACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATT
* *
58227 GAGATGCTCGAAAAAACAAATCCTT-CTATCGAATATTGCTGAGATTTAGTTCGATGAATATAGA
130 GAGATGCTCGAAAAAACAAATCCTTAC-ATCCAATATTGCTGAGATTTGGTTCGATGAATATAGA
*
58291 TATTTCAAGGAGTTTTTGTGCAAAAAATCATGCAAAATTGAGCCGGGGCTTCGGAACGCGTTTTT
194 TATTTCAAGGAGTCTTTGTGCAAAAAATCATGCAAAATTGAGCCGGGGCTTCGGAACGCGTTTTT
* * *
58356 AGCCAAAAAACCGTGATGGTGTAAGTACACAATTTAGACT--AAA-T---CC-GAATTTTTTTTC
259 AGCC-AAAAACCGTGATGGT-T-AGTACACAATTTTGACTAAAAACTGACCCAAAAATTTTTTTC
58414 -
321 T
* * *
58414 CAATTTTTTGCTACTATACACAGAAAAAGATATATAATTCGATGCCAAAAATATTGACGGACTTT
1 CAATTTTTTGCCACAATACACAGAAAAA-A-ATATAATTCAATGCCAAAAATATTGACGGACTTT
58479 TCACGCTTCTAATATCGTTTTTCCA--TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGAT
64 TCACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGAT
* * * *
58542 TGAGATGCTAGAAAAAACAAATCCTTACATCCAATATTGCTGAGATTTGATTCAATTAATATAGA
129 TGAGATGCTCGAAAAAACAAATCCTTACATCCAATATTGCTGAGATTTGGTTCGATGAATATAGA
* * * * *
58607 TCCTCTTCAAGGAGTCTTTGCGCAAAAAATCATGTAAAATTGAGCCGGGGCTCCGGATCGCGTTT
194 T-AT-TTCAAGGAGTCTTTGTGCAAAAAATCATGCAAAATTGAGCCGGGGCTTCGGAACGCGTTT
* * *
58672 TTAGCCAAAAACTGTGATAGTTGTTAGTACACAATTTTGACTAAAAACTGACCCGAAATTTTTTT
257 TTAGCCAAAAACCGTGAT-G--GTTAGTACACAATTTTGACTAAAAACTGACCCAAAAATTTTTT
58737 TCT
319 TCT
* * * ** *
58740 CAATTTTTTGCCACAACAAACAGAAAATATATATAATTCAATGCCAAAAATATTGACAAACTTTC
1 CAATTTTTTGCCACAATACACAGAAAA-AAATATAATTCAATGCCAAAAATATTGACGGACTTTT
* * * * * *
58805 CACGATTCTGATTTCGTTTTTCCTTTTTTTTTTCCGAATTAATTTCAAATTAAATCGAAACACGA
65 CACGCTTCTAATATCGTTTTTCC--ATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGA
*
58870 TTGAGATGCTCGAAAAAACAAATCCTT-CTATCGAATATTGCTGAGATTTGGTTCGATGAATATA
128 TTGAGATGCTCGAAAAAACAAATCCTTAC-ATCCAATATTGCTGAGATTTGGTTCGATGAATATA
* * * *
58934 GATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAATTGAGCCAGGGCTTCGGAACGTGCTT
192 GATATTTCAAGGAGTCTTTGTGCAAAAAATCATGCAAAATTGAGCCGGGGCTTCGGAACGCGTTT
* ** * * *
58999 TTAGCCAAAAACCGTGATGGTTAGCACACAATTTAAACTATAAATTGACCCGAAAATTTTTTTTC
257 TTAGCCAAAAACCGTGATGGTTAGTACACAATTTTGACTAAAAACTGACCC-AAAAATTTTTTTC
59064 T
321 T
* * **
59065 CAATTTTTTGCCACAATACATAGAAAAAAAATATAATTCAATGCCAAAAATATTGGCGGGTTTTT
1 CAATTTTTTGCCACAATACACAG-AAAAAAATATAATTCAATGCCAAAAATATTGACGGACTTTT
** *
59130 CACATTTCTAATATCG-TTTTCTATTTTTTTTCC-AATTTAATTTCTAATTAAATCGAAACAAGA
65 CACGCTTCTAATATCGTTTTTCCA-TTTTTTTCCGAA-TTAATTTCTAATTAAATCGAAACAAGA
*
59193 TTGAGATGCTCGAAAAAACAAATCCTT-CTAT-CGA-A-T-CTGAGATTTGGTTCGATGAATATA
128 TTGAGATGCTCGAAAAAACAAATCCTTAC-ATCCAATATTGCTGAGATTTGGTTCGATGAATATA
* * ** * *
59253 GTTATTTCAAGGATTCTTTGTGCAAAAAAAAATACAAAATTGAGCCGGGGCTCCGGAACGCGTTT
192 GATATTTCAAGGAGTCTTTGTGCAAAAAATCATGCAAAATTGAGCCGGGGCTTCGGAACGCGTTT
* * *
59318 TTAGCCAAAAATCGTGATGGTTAGTACACAATTTCGACTAAAAACTGACCCGAAAATTTTTTTCT
257 TTAGCCAAAAACCGTGATGGTTAGTACACAATTTTGACTAAAAACTGACCCAAAAATTTTTTTCT
* * * *
59383 CAATTTTTTGCCACAATATACAGAAAAAATATATATTTCAATGCCAAAAAGATTGACAGACTTTT
1 CAATTTTTTGCCACAATACACAGAAAAAA-ATATAATTCAATGCCAAAAATATTGACGGACTTTT
* * *
59448 CACACTTCTAATATCGTTTTGCCA-TTTTTTCCGAATTAATTTCTAATTAAATCAAAACAAGATT
65 CACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATT
59512 GAGATGCTCGAAAAAACAAATCCTTACATCCAATATTGCTGAGATTTGGTAT-GATGAATATAGA
130 GAGATGCTCGAAAAAACAAATCCTTACATCCAATATTGCTGAGATTTGGT-TCGATGAATATAGA
* * *
59576 TATTTCAAGGAGTCTTTGTTCAAAAAATCATGCAAAATTGAGTCGGGGCTTCAGAACGCGTTTTT
194 TATTTCAAGGAGTCTTTGTGCAAAAAATCATGCAAAATTGAGCCGGGGCTTCGGAACGCGTTTTT
** * * * * * *
59641 AGAAAAAAAACTGTCATGGTTAGTACACAATTTTTGACTTAAGACTGATCCGAAAATTTATTTTC
259 AG-CCAAAAACCGTGATGGTTAGTACACAA-TTTTGACTAAAAACTGACCCAAAAATTT-TTTTC
*
59706 C
321 T
*
59707 CAATTTTTTGCCACAATACACAAAAAATATATATATAATTCAATGCCAAAAATATTGACAGG-CT
1 CAATTTTTTGCCACAATACACAGAAAA-A-A-ATATAATTCAATGCCAAAAATATTGAC-GGACT
* * * *
59771 TTTCACGTTTCTAATATCGTTTTTCCA-TTTTTTCCAAATTGATTTCTAATTAAATTGAAACAAG
62 TTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAG
* ** *
59835 ATTGAGATGCTCAAAAAAACAAATCCTTTTATCGAATATTGCTGAGATTTGGTTCGATGAATATA
127 ATTGAGATGCTCGAAAAAACAAATCCTTACATCCAATATTGCTGAGATTTGGTTCGATGAATATA
* *
59900 GATATTTCAAGGAGTTTTTGTGCAAAAAATCATGCAAAATTGAGTCGGGGCTTCGGAACGCGTTT
192 GATATTTCAAGGAGTCTTTGTGCAAAAAATCATGCAAAATTGAGCCGGGGCTTCGGAACGCGTTT
* * * * **
59965 TTAGTCAAAAACCGTGATGGTAAGTACACAATTTCGACTAAAAACTGATCCAAATTTTTTTTTTC
257 TTAGCCAAAAACCGTGATGGTTAGTACACAATTTTGACTAAAAACTGACCCAAA-AATTTTTTTC
60030 T
321 T
*
60031 CAATTTTTTGCCAGAATACACAGAAAAAAATATA
1 CAATTTTTTGCCACAATACACAGAAAAAAATATA
60065 CTCCCTCTGT
Statistics
Matches: 2865, Mismatches: 316, Indels: 174
0.85 0.09 0.05
Matches are distributed among these distances:
314 12 0.00
315 22 0.01
316 143 0.05
317 83 0.03
318 160 0.06
319 133 0.05
320 62 0.02
321 371 0.13
322 580 0.20
323 235 0.08
324 135 0.05
325 232 0.08
326 239 0.08
327 71 0.02
328 2 0.00
329 95 0.03
331 2 0.00
332 2 0.00
333 82 0.03
334 48 0.02
335 116 0.04
336 40 0.01
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.34
Consensus pattern (321 bp):
CAATTTTTTGCCACAATACACAGAAAAAAATATAATTCAATGCCAAAAATATTGACGGACTTTTC
ACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTG
AGATGCTCGAAAAAACAAATCCTTACATCCAATATTGCTGAGATTTGGTTCGATGAATATAGATA
TTTCAAGGAGTCTTTGTGCAAAAAATCATGCAAAATTGAGCCGGGGCTTCGGAACGCGTTTTTAG
CCAAAAACCGTGATGGTTAGTACACAATTTTGACTAAAAACTGACCCAAAAATTTTTTTCT
Found at i:62079 original size:321 final size:321
Alignment explanation
Indices: 60362--69859 Score: 4584
Period size: 324 Copynumber: 29.0 Consensus size: 321
60352 ACAGAGGGAG
* *
60362 TATAATGT-AATGCCAAAAATATTGACGGACTTTT-ACCCTTCTAATATCGTTTTTCCATTTTTT
1 TATAAT-TCAATGCCAAAAATATTGACGAACTTTTCACGCTTCTAATATCGTTTTTCCA-TTTTT
* * *
60425 TTCCGAATTAATTTCTAACTAAATTGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTACAT
64 TTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATAT
* * *
60490 CCAATATTGCTGAGATTTCG-TACGATGAATCTAAATATTTCAAGGAGTCTTTGTGCAAAAAAAT
129 CCAATATTGCTGAGATTT-GATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGC-AAAAAAT
* * * ** *
60554 CATGCAAAATTGAGTCGGGGCTTCGGAACACGTTTTTAGAAAAAAACCGTCATGGTTAGTACACA
192 CATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACA
* * *
60619 ATTTTTGACTTAAGACTGACCCGAAAATTTATTTTCTCAATTTTTTGCCACAATACACAGAAAAA
257 A-TTTCGACTAAAAACTGACCCGAAAATTT-TTTTCTCAATTTTTTGCCACAATACACAGAAAAA
*
60684 AA
320 TA
* *
60686 TATAATTCAATGCCAAAAATATTGAC-AGGCTTTTCACGTTTCTAATATCGTTTTTCCATTTTTT
1 TATAATTCAATGCCAAAAATATTGACGA-ACTTTTCACGCTTCTAATATCGTTTTTCCATTTTTT
* * * * * * *
60750 TCCAAATTGATTTCCAATTAAATTGAAACAAGATTGAGATGTTCGAAAAAACAAATGCTTACATC
65 TCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATC
* * *
60815 GAATATTGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAATTCAT
130 CAATATTGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCAT
* *
60880 GCAAAATTGACCCGGGGCTTCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATT
195 GCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATT
* * * * * *
60945 TTGGCTAAAAACTGACCCGAAAATTTTTTTCCCAATTTTTTGCCACAACAAACATAAAATATA
260 TCGACTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGAAAA-ATA
* *
61008 TATAATTCAATGCC---------G--GAA---AT-ACGCTTCTAATATCATTTTTCCATTTTTTT
1 TATAATTCAATGCCAAAAATATTGACGAACTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTT
* * * * *
61058 TCGAATTATTTTCTAATTACATCAAAATAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
66 CCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
* * * * *
61123 AATATTGGTGAGATTTGGTTCGAT-AAGTATATATATTTTTCAAGGAGTCTTTGCGCCAAAAATC
131 AATATTGCTGAGATTTGATTCGATGAA-TATAGATA--TTTCAAGGAGTCTTTGTGCAAAAAATC
* * * *
61187 ATGCAAAATTGAGCCAGGGCTCCAGAACGCGTTTTTAGCCAAAAACCGTGATGTTTAGTGCACAA
193 ATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAA
61252 TTTC-AGCTAAAAACTGACCCGAAAATTTTTTTTCTCAA-TTTTTGCCACAATACACAGAGAAAA
258 TTTCGA-CTAAAAACTGACCCGAAAA-TTTTTTTCTCAATTTTTTGCCACAATACACAGA-AAAA
61315 TA
320 TA
* * *
61317 TATATTTCAATGCCAAAAATATTTAC-AGACTTTTCAAGCTTCTAATATCGTTTTTCCA-TTTTT
1 TATAATTCAATGCCAAAAATATTGACGA-ACTTTTCACGCTTCTAATATCGTTTTTCCATTTTTT
*
61380 TCCGAATTAATTTAC-AATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAGAAATCCTTATAT
65 TCCGAATTAATTT-CTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATAT
* * * *
61444 CCAATATTGCTAAGATTTGGTTCGATTAATATATATATTTCAAGGAGTCTTTGTGGC--AAAATC
129 CCAATATTGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGT-GCAAAAAATC
* * *
61507 ATGCAAAATTGAGCCGGTGCTCCGGAACGCG-TTTTAGCCAAAAAAAACCTTGCTGGTTAGTACA
193 ATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCC---AAAAACCGTGATGGTTAGTACA
*
61571 CAATTTC-AGCTAAAAACTGACCCGAAATTTTTTTTTTCTTCCAA-TTTTT-CCA-AATACACAG
255 CAATTTCGA-CTAAAAACTGACCCGAAA--ATTTTTTTC-T-CAATTTTTTGCCACAATACACAG
61632 AGAAAATA
315 A-AAAATA
* * * ** *
61640 TATATTTCAATGCAAAAAATATTGAC-AA---TGCACGCTTCTAATATCAATTTT-C-TATTTTT
1 TATAATTCAATGCCAAAAATATTGACGAACTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTT
* * * * * *
61699 ACGAATTAATTTCTAATTAAATCGAAATAAGATTGAAATACTCGAAAAAATAAATCCTTACATCC
66 CCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
* * * *
61764 AATATTGCTGATATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGCGCGAAAAATCATA
131 AATATTGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
* ** *
61829 CAAAATTGAGCCGGGGCTCCGGAACGCGTTGTTAGATAAAAACTGTGATGGTTAGTACA-AATTT
196 CAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAA-TT
* * ** * * *
61893 TTGGCTAAAAACTGACCCGAAAATTACTTTCTCAATATTTTGCCACAACAAACAGAAAATATA
260 TCGACTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGAAAA-ATA
* * * *
61956 TGTAATTCAATTCCAGAAATATTGACGAAGTTTTCACGCTTCTAATATCGTTTTTCCA-TTTTTT
1 TATAATTCAATGCCAAAAATATTGACGAACTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTT
* * * * *
62020 CCGAATTAATTTATTATTAAATGGAAACAAGATTCAGATGCTCGAAAAAACAAATCCTTATATTC
66 CCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
* * ** * * ** *
62085 AATATTGGTGAGATTTGGTTTAATGAGTATATATATTTCAAGGAGTCTTTGCACCAAAAATCATG
131 AATATTGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
* * * ** * *
62150 CAAAATTAATCCAGGG-TCCATAACGCGTTTTTAGCCAAAAACCATGATGTTTAG-ATCACAATT
196 CAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTA-CACAATT
* * * *
62213 TC-AGCTAAAACCTGATCCGAAATTTTTTTTTCTCAA-TTTTTGCCACAATACACATAGAAAATA
260 TCGA-CTAAAAACTGACCCGAAA-ATTTTTTTCTCAATTTTTTGCCACAATACACAGA-AAAATA
** * *
62276 TATTTTTCAATGCAAAAAATATTGAC-AGACTTTTCACGCTTCTAATACCGTTTTTCCA-TTTTT
1 TATAATTCAATGCCAAAAATATTGACGA-ACTTTTCACGCTTCTAATATCGTTTTTCCATTTTTT
* *
62339 T-C---TGAA-TT-T-ATT---T-----C-----T-A-ATGCTCGAAAAATCAAATCCTTATATC
65 TCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATC
* * * *
62382 CAGTGTTGCAGAGATTTGATTTGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCAT
130 CAATATTGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCAT
* * *
62447 GCAAAATTGAGCCGGGGCTCCGGAACGCGTTCTTAGCCAAAAACAGTGATGGTTAGTACTCAATT
195 GCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATT
*
62512 TCGACTAAAAACTGACCCGAAAATTTTTTTCCTCAA-TTTTTGCCACAATACACAGAAAAAAA
260 TCGACTAAAAACTGACCCGAAAATTTTTTT-CTCAATTTTTTGCCACAATACACAGAAAAATA
* * * * **
62574 TAATAATACAATGCCAAAAATATTGATGGACTTTTCACGCTACTAATATTATTTTTCCA-TTTTT
1 T-ATAATTCAATGCCAAAAATATTGACGAACTTTTCACGCTTCTAATATCGTTTTTCCATTTTTT
* * * *
62638 TCCGAATTAATTTCTAATTAAATCGAAACAGGATTGAGATGCTTGAAAAAACAAATCTTTACATC
65 TCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATC
* * * *
62703 CAATATTGCTGAGATTCGGTTCGATGAATATAGATATTTGAAGGAGTCTTTGCGTCAAAAAATCA
130 CAATATTGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTG-CAAAAAATCA
* * * *
62768 TGCAAAATTGAGCCGGGGCTCTGGAACGAGTTTTTAGCCAAAAACTGTGCAGGGTTATAGTACAC
194 TGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTG-ATGG-T-TAGTACAC
* * * *
62833 AATTT-TAGCTAAAAACTTACCC-AAAATTTTTTTTCTCAATTTTTT-CAACAATACGCAGAGAA
256 AATTTCGA-CTAAAAACTGACCCGAAAA-TTTTTTTCTCAATTTTTTGCCACAATACACAGA-AA
62895 AATA
318 AATA
* * *
62899 TATATTTCAATGCCAAAAATATTGACAAACTTTTCACTCTTCTAATATCGTTTTTCCA-TTTTTT
1 TATAATTCAATGCCAAAAATATTGACGAACTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTT
* * *
62963 CCGAATTAATTTCTAATTAAATCGAAAAAAGATTGAGATACTTGAAAAAACAAATCCTTATATCC
66 CCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
* * * * *
63028 AATATTGCTGCGATTTGATTCGATGAGTGTAGATATTTCAAGGACTCTTTGTGAAAAAAATCATG
131 AATATTGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
* *
63093 CAAAATTGAGCCGGGGTTCCGGAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACAATTT
196 CAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATTT
* * * * * * *
63158 CAACTAAAAATTAACCCGAAAAAGTTTTTTCTTAATTTTTTGCCACAATACTCAGAAATATA
261 CGACTAAAAACTGACCCG-AAAATTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAATA
* * *
63220 TATAATTGAATGCCAAAAATATTGACAAACTTTTCACGCTTCTAATATTGTTTTTCCATTTTTTT
1 TATAATTCAATGCCAAAAATATTGACGAACTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTT
* * * *
63285 CCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATACTCGAAAACACAAATCTTTTTATCC
66 CCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
* * * *
63350 AATATTGCTGAGATTTGACTAGATGAATATAGATATTTCAAGGAGTTTTTGTGCAAAAAATAATG
131 AATATTGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
* * * *
63415 CAAAATTGAGCCGGGGCTCCGAAACGCATTTTTAGTCAAAAACCGTGATGGTTAGAACACAATTT
196 CAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATTT
* * * * *
63480 CGACTAAAAGCTAACCCGAAATTTTTTTTCTCAATTTTTTGCCACAATACTCATAAAAAATA
261 CGACTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACA-GAAAAATA
* * *
63542 TATAATTCAATGCCAAAAATATTGATGGACTTTTCACGCTTCTAATATCATTTTTCCATTTTTTT
1 TATAATTCAATGCCAAAAATATTGACGAACTTTTCACGCTTCTAATATCGTTTTTCCA--TTTTT
*
63607 TTCCGAATTAATTTCTAATTAAATCGAAACAGGATTGAGATGGCTCGGAAAAAACAAATCCTTAT
64 TTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGAT-GCTC-GAAAAAACAAATCCTTAT
* * ** * * *
63672 ATGCAATGTTGCACAGATTTGATTCGATGAGTATTGATATTTCAAGGATTCTTTGTGCAAAAAAT
127 ATCCAATATTGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAAT
* * * * *
63737 CATGCAAAATTGTGTCGGGGCTCCGGAACGCGTTTCTAGCAAAAAACCATGATGGTTAGTACACA
192 CATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACA
* * * * * *
63802 ATTTCGACTAAAAAGTAACCCGAAAAGTATTTTTCTCAATTTTTTGCCAAAATACACAAAAAAAA
257 ATTTCGACTAAAAACTGACCCGAAAA-TTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAT
63867 A
321 A
** *
63868 TATAATTCAATGCCAAAAATATTGACGGGCTTTTCACGTTTCTAATATCGTTTTTCCATTTTTTT
1 TATAATTCAATGCCAAAAATATTGACGAACTTTTCACGCTTCTAATATCGTTTTTCCA-TTTTTT
* * * * *
63933 TCCAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCCAAAAAACAAATCCTTCTATT
65 TCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATC
* * * *
63998 GAATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGAAAAAAAATAA
130 CAATATTGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTG-CAAAAAATCA
* * * * * * * * * *
64063 TGTAAAATTGAGCAGAGACTTCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTAAGTATAAAAC
194 TGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAAT
* * * * *
64128 TTCGACTAAAAACTAATCCGAAAATTTTTTTTCTTATTTTTTTGCCACAATAAACAGAAAACATA
259 TTCGACTAAAAACTGACCCGAAAA-TTTTTTTCTCAATTTTTTGCCACAATACACAGAAAA-ATA
* * ** * * * *
64193 TATAATTTAATGCCAAAAATATTGACGGAGATTT---GATTCGATGAATATAGATATTTCAAGGA
1 TATAATTCAATGCCAAAAATATTGACGAACTTTTCACGCTTC--T-AATATCG-TTTTTC---CA
* * * ** * * * * *** ** ** * * ** * **
64255 GTCTTTGTGC-AAAAAATCATGCAAAATTGAGTCGGGGCTCCGGAACGCGTTTTTAGCCAAAATC
59 -TTTTTTTCCGAATTAAT--TTC-TAATTAAATC--GAAACAAGATTGAGATGCT--CGAAAAAA
** ** * * * * ** * * * *
64319 CGTGATGGTTAGTA--AAACATTTCGACTAAAAACTGATCCGA--AA-AT-TATTTTTCTCA--A
116 C-AAATCCTTA-TATCCAATA-TT-G-CTGAGATTTGATTCGATGAATATAGATATTTC-AAGGA
* * ** **
64376 -T-TTTTTGCCACAATACA-CATAAAAAATAT-A--------T----AA-----TTCAATGCCAA
175 GTCTTTGTG-CA-AA-AAATCATGCAAAAT-TGAGCCGGGGCTCCGGAACGCGTTTTTA-GCC-A
*** * ** * * ** ** *** *** **
64420 AAAATATTGACGGATTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCCG--AATTAATTTC
234 AAAACCGTGATGG-TTAGT-A--C-AC-AATTTCG--ACTAAAAACTGACCCGAAAATTTTTTTC
* * ** * * *
64483 T-AATTAATTCGAAAAAAGATTGAGATGCTCGAAAAA-A
291 TCAATT-TTTTG-CCACA-A-T-ACA--C-AGAAAAATA
* * * * * * *
64520 CA-AATCCTTATAT-CC---AATGTTGCAC-AA-ATTT---GATTCGATGAATATAGATATTTCA
1 TATAAT--TCA-ATGCCAAAAATATTG-ACGAACTTTTCACGCTTC--T-AATATCG-TTTTTC-
* * * * * * * **** *** ** ** * * * *
64575 AGGAGTCTTTGTGC-AA-AAAGTCATGCAAAATTGTGCCGGGGTCCGGAACGCGTTTCTAGCAAA
57 --CA-TTTTTTTCCGAATTAA-T--TTC-TAATTAAATC-GAAACAAGATTGAGATGCTCG-AAA
** ** * * ** * ** * * *
64638 AAACCGTGATGGTTAGTA-CACAAT-TTCGACTAAAAAGTAACCCGA--AA-A-ATATTTTTCTC
113 AAA-C-AAATCCTTA-TATC-CAATATT-G-CTGAGATTTGATTCGATGAATATAGATATTTC-A
* * * * ** *** ***
64697 A--A-T-TTTTTGCCAAAATACA-CAGGAAAAAAAAATATAATTCAATGC-CAAAAATATTGACG
171 AGGAGTCTTTGTG-CAAAA-A-ATCATG----CAAAAT-TGAGCCGGGGCTC---CGGA---ACG
* * * **** * ** ** * * *
64756 GGCTTTTCACGTTTCTAATATCATTTTTCCATTTTTTTTACAAATTAATTTCTAATTAAATCGAA
222 CG-TTTTTA-G---CCAA-A--AACCGT-GATGGTTAGTAC--A-CAATTTC-GACT-AA---AA
* ***** * * * * * * ***
64821 ACAAGATTGAGATGCTCCAAAAAACAAATCCTTCTATTGAATATTGCTGAGATTTGGTTC-GATA
270 AC-----T--GA--C-CCGAAAATTTTTTTC-TCAATT---TTTTGC-CACA-AT-ACACAGA-A
64885 AATATA
317 AA-ATA
* * ** * * * * * ** * * *
64891 GATATTTCAAGGAGTCTTAGTGAAAAAAAATCATGTAAAATTGAGCCGAGGCTTCGAA-ACGCGT
1 TATAATTC-A--A----T-GCCAAAAATATTGACG--AACTT--TTC-ACGCTTCTAATA-TCGT
*** ** * * * * *
64955 TTTTAGCCAAAAACCGTGAT-GGTAAGTATAAAACTTCGACTAAAAACTAATTCGAAA-ATTTTT
52 TTTT--CC----ATTTTTTTCCG-AA-T-T--AA-TT--TCT---AATTAAATCGAAACA----A
** * ** * ** *
65018 TTTCTTA-ATTTTTTGCCACAATAAACAGAAAACATATATAATTTAATGCCAAAAATATTGAC-G
96 GAT-TGAGA--TGCT-CGA-AA-AAACA-AATCCTTATA--------T-CC---AATATTG-CTG
* * * * * * * * ** * *
65081 -GATTT--TTCACGCTTCTAATATCG-TTTTTC---CA-TTTTTTTTCGAATTAAT--TTC-TAA
141 AGATTTGATT--CG-AT-GAATATAGATATTTCAAGGAGTCTTTGTGC-AAAAAATCATGCAAAA
* ** ** ** ** * * ** * ** ** *
65135 TTAAATC--GGAACAAGATTGAGATGCT--CGAAAAA-C-AAATCCTTA-TATACAATGTT-G-C
201 TTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAAT-TTCGAC
* ** * ** * * * * *
65191 -ACAGATTTTATTCGATGAATATAGATATTTC-AAGGAGTCTTTGTG-CA-AA-AAATCATGCAA
265 TA-AAAACTGACCCGA--AA-AT--TTTTTTCTCA--A-T-TTTTTGCCACAATACA-CA-G-AA
* *
65251 AATTG
317 AAATA
* * * * * *
65256 TGTTGAGGCTCCGGAACGCGTTTTTAGCCAAAATCCGTGATGGTTA-GTACACAATTTCGACTAA
1 T-AT-A--ATTC--AA--------T-GCCAAAA---AT-AT--TGACG-A-AC-TTTTC-AC---
* * * ** * * * * *
65320 AAACTGATCCGAAAATTATTTTTCTCAATTTTTTGCCACAATACACATAAAAAATATATAATTCA
38 --GCT--T-CTAATATCGTTTTTC-C-ATTTTTTTCC-GAAT-----T----AATTTCTAATTAA
* * * ** ***** * * * * * *
65385 ATGCCAAAAAATATTGACGGATTTTTC-ACGTTTCTAATATCGTT-TTTCCATTTTTTTCCGAAT
86 AT-CGAAACAAGATTGA--GA-TGCTCGAAAAAAC-AA-ATCCTTATATCCA-ATATTGCTG-A-
* * ** * * * ** * * * *** *
65448 TAATTTCTTATTAAATCGAAAAAAGATTGAGATGCTCGAAAAAACAAATCCTTAT--ATCCAATG
142 -GA-TT-TGATTCGAT-GAATATAGA-T---AT-TTC-----AAGGAGTCTTTGTGCAAAAAATC
* * ** * ** *** * * * *
65511 TTGCACAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGT-GCAAAAAATCATGCAA
193 ATGCA-A-AATTGAGCCG-GGGCTCCGGA-A---C---GCGT-TTT-TAGCCAAAAACCGTG---
** * ** * *** ** * *
65575 AATTGTGTCGGGGCTCCGGAACGCGTTTCTAGC-AAAAA---ACCCTG-ATGGTTAGTACACAAT
243 -A-TG-GT--TAG-TAC---AC-AATTTCGA-CTAAAAACTGACCC-GAAAATTTTTTTCTCAAT
*** ** * **
65635 TTCGAGTAAAAAGTA-ACCCAAAAAT-
296 TTTTTGCCACAA-TACACAGAAAAATA
** * * * *
65660 TATTTTTCTTAATTTTTTGCCAAAATACATAGAAAAAAAATATAAATCAATGCCAAAAATATTGA
1 TATAATTC--AA-----TGCC-AAA-A-AT---------AT-T-GA-C---G----AACTTTTCA
* *
65725 CGGGATTTTCACCTTTCTAATATCGTTTTTCCATTTTTTTTCCAAATTAATTTCTAATTAAATCG
37 C--G--CTT-------CTAATATCGTTTTTCCA-TTTTTTTCCGAATTAATTTCTAATTAAATCG
* * ** *
65790 AAACAAGATTGAGATGCTCCAAAAAACAAATCCTTCTATTGAATATTGCTGAGATTTGGTTCGAT
90 AAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATATTGCTGAGATTTGATTCGAT
* * * * *
65855 GAATATAGATATTTCAAGGAGTCTTTGTGAAAAAAAATCATGTAAAATTGAGCCGAGGCTTCGAA
155 GAATATAGATATTTCAAGGAGTCTTTGTG-CAAAAAATCATGCAAAATTGAGCCGGGGCTCCGGA
* * * * * * * *
65920 ACGCGTTTTTAGCCAAAAACCGTGATGATAAGTATAAAACTTCGACTAAAAACTAATCCAAAAAT
219 ACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATTTCGACTAAAAACTGACCCGAAAAT
* * *
65985 TTTTTTCTTAATTTTTTGCCACAATAAACAGAAAAAAA
284 TTTTTTCTCAATTTTTTGCCACAATACACAGAAAAATA
* * * *
66023 TATATTTAAATGCCAAAAATATTGACGGACTTTTCACGTTTCTAATATCGTTTTTCCATTTTTTT
1 TATAATTCAATGCCAAAAATATTGACGAACTTTTCACGCTTCTAATATCGTTTTTCCA---TTTT
* * * * * *
66088 TTTCCAAATTAATTTCTGACTAAATTGAAACAAGATTGAGATGCTCGAAAAGACAAATCCTTACA
63 TTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATA
* * * *
66153 TCCAATATTGCGGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAAATC
128 TCCAATATTGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATC
* * * * *
66218 ATACAAAATTGAGCCGGGGCTCCAGAACGCGTTTTTAGCTAAAAAACTGTGATAGTTAGTACACA
193 ATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGC-CAAAAACCGTGATGGTTAGTACACA
* * * * *
66283 ATTTTGGCTAAAAACTGACCCGAAAATTTTTTTTTCTCAATTTTTTGCCACAACAAACATAAAAT
257 ATTTCGACTAAAAACTGACCCGAAAA--TTTTTTTCTCAATTTTTTGCCACAATACACAGAAAA-
66348 ATA
319 ATA
* **
66351 TATAATTCAATGCC---------G--GAA---AT-ACGCTTCTAATATTATTTTTCCATTTTTTT
1 TATAATTCAATGCCAAAAATATTGACGAACTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTT
* * * *
66401 TCGAATTAATTTCTAATTACATCGAAATAAGATTGAGATGCTCGAAAAAACAAATCCTTACATCC
66 CCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
* * * * * *
66466 TATATTGCTGAGATTTGGTTCGATGAATATATATATTTTAAGGAGCCTTTGTACAAAAAATCATG
131 AATATTGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
* * * *
66531 CAAATTTGAGTCGGGGCTCCGGAACGCATTTTTAGCCAAAATCCGTGATGGTTAGTACACAATTT
196 CAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATTT
* *
66596 CGACTAAAAACTGATCCG-AAATTTTTTTCTCAATTTTTTGCCACAATACACATAAGAAATA
261 CGACTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGAA-AAATA
*
66657 TATAATTCAATGCCAAAAATATTGAC-AGACTTTTCACGCTTCTAATATCATTTTTCCA-TTTTT
1 TATAATTCAATGCCAAAAATATTGACGA-ACTTTTCACGCTTCTAATATCGTTTTTCCATTTTTT
* * *
66720 TCCGAATTAATTTCTGATTAAATCGAAACAAGATTGAGATGCTCG-AAAAAGAAATCCTTATGTC
65 TCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATC
** * * * *
66784 CAATATTGCAAAGATTTGGTTCGATTAATATATATATATATATATATATATATATATCAAGGAGA
130 CAATATTGCTGAGATTTGATTCG--------------AT-GA-ATATAGATAT-T-TCAAGGAGT
* * * * * * * *
66849 CCTTGCGTC-AAAAATCATACAAAATTGAGTCGGGGCACCGGAATGCATTTTTAGCAAAAACACC
177 CTTTGTG-CAAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAA-ACC
* *
66913 GTGATGG-T--T---CAA---C-A--AAAAACTGACCCGATAAATGTTTTTCTCAATTTTTTGTC
240 GTGATGGTTAGTACACAATTTCGACTAAAAACTGACCCGA-AAATTTTTTTCTCAATTTTTTGCC
* *
66966 ACAATACACCGAAAAAAAAA
304 ACAATACA-C-AGAAAAATA
* * *
66986 TATAATTCAATGTCAAAAATATTGAC-AGGCTTTTCACGTTTCTAATATCG-TTTTCCA-TTTTT
1 TATAATTCAATGCCAAAAATATTGACGA-ACTTTTCACGCTTCTAATATCGTTTTTCCATTTTTT
* * * *
67048 TCCAAATTAATTTCTAATTAAATCGAAACAAGATTGTGATGCTCGAAAAAACAAATCATTCTATC
65 TCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATC
* ** * *
67113 GAATATTGCTGAGATTTGGCTCGATGAATATAGATAATTCAGGGAGTCTTTGTGCAAAAAATCAT
130 CAATATTGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCAT
* * * * * * *
67178 GCATAATTGAGCCGAGGCTTCGGAATGCGTTTTTAGCCAAAAAACCATGATGGTAAGTATTA-AA
195 GCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCC-AAAAACCGTGATGGTTAGTA-CACAA
* * * *
67242 TTACGACCAAAAACTGATCCGAAATTTGTTTTTTCTCAATTTTTTGCCACAATACACAGTAGAAA
258 TTTCGACTAAAAACTGACCCGAAA-AT-TTTTTTCTCAATTTTTTGCCACAATACACAG-A-AAA
67307 ATA
319 ATA
* * * *
67310 TATAATTTAATACCAAAAATATTGACGAACTTTACACGCTTCTAATATCATTTTTCCATTTTTTT
1 TATAATTCAATGCCAAAAATATTGACGAACTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTT
* *
67375 CCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCG-AAAAACAAATCCTTCTATCG
66 CCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
** * *
67439 AATATTGCTGAGATTTGGCTCGATGAATATAGATCA-TTCAGGGAGTCTTTGGGCAAAAAATCAT
131 AATATTGCTGAGATTTGATTCGATGAATATAGAT-ATTTCAAGGAGTCTTTGTGCAAAAAATCAT
* * * * * * * *
67503 GCATAATTGAGCCGAGGCTTCGGAACGCATTTTTAGCCAAAAAACCATGATGGTAAGTATAAAAT
195 GCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCC-AAAAACCGTGATGGTTAGTACACAAT
* * *
67568 TACGACTAAAAACTGATCCGAAATTTGTTTTTTCTCAATTTTTTGCCACAATACACAGTAGAAAA
259 TTCGACTAAAAACTGACCCGAAA-AT-TTTTTTCTCAATTTTTTGCCACAATACACAG-A-AAAA
67633 TA
320 TA
* * * * *
67635 TATAATTTAATACCAAAAATATTGACGGAGTTTTCACGCTTCTAATATCTTTTTTCCATTTTTTT
1 TATAATTCAATGCCAAAAATATTGACGAACTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTT
* * *
67700 -CGAATTAATTTCTAATTAAATCGAAACAAGATTGACATGCTCGAAAAAACAAATCTTTACATCC
66 CCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
* *
67764 AATATTGCTGAGATTTGGTTCGATGAATAT--ATA--T-----AGTCTTTATGCAAAAAATCATG
131 AATATTGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
* * * ** * * ** **
67820 CAAAATTGATCCGGGGCTTCGGAAAGACACAATTTT-GACTAAAAACTGATCCGAAATTTTTTTT
196 CAAAATTGAGCCGGGGCTCCGG--A-ACGCGTTTTTAG-CCAAAAACCG-T--G--ATGGTTAGT
* ** * * * * * *** * *
67884 TCTTAATTTCTTGCCAC-AAAACACAGA--AGAAAA---ATATAT-AATTCAATGCCA-AAAATA
252 ACACAATTTC--G--ACTAAAA-ACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACA
** *****
67941 TTG-ACGGGC
312 CAGAAAAATA
* **** * * **
67950 T-T--TTC-ACGCTTCTAATA-T--C--A--TTT-----TTC-CAT-T-TTTTTTCCGAATTAAT
1 TATAATTCAATGCCAAAAATATTGACGAACTTTTCACGCTTCTAATATCGTTTTTCC--ATTTTT
* * * ** * * * *** * ** * **
67996 TT-CTAATTAA-ATCGAAACAAGATTGAGATGCTCGAAAAAACAAAT-CT-TTACATCCAATATT
64 TTCCGAATTAATTTCTAATTAA-ATCGA-A---AC-AAGATTGAGATGCTCGAAAAAACAA-A-T
* * * **** * * * ** * *
68057 GCTGAGATTTGGT-TCGATGA-ATAT-ATATATAT-ATATATATATATTTCAAGGAGTCTTTATG
121 CCTTATATCCAATATTGCTGAGATTTGAT-TCGATGA-ATATAGATATTTCAAGGAGTCTTTGTG
* * * * *
68118 CAAAAAATCATGCAAAATTGATCCGGGGCTTCGGAACGCATTTTTAGCCAAAAACCGTGATGATA
184 CAAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTT
* * * *
68183 AGTACACAATTTCGACTAAAAACTGATCCGAAATTTTTTTTCTTAATTTCTTGCCACAATACACA
249 AGTACACAATTTCGACTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACA
68248 GAAAAAATA
314 G-AAAAATA
* ** *
68257 TATAATTCAATGCCGAAAATATTGACGGGCTTTTCACGCTTCTAATATCATTTTTCCATTTTTTT
1 TATAATTCAATGCCAAAAATATTGACGAACTTTTCACGCTTCTAATATCGTTTTTCCA-TTTTTT
* * * * *
68322 TCCGAATAAATTTCTAATTAAATCGAAATAAGATTGAGCTGCTCGAAAACAAAAAATCCTTACAT
65 TCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAA-AACAAATCCTTATAT
* * * *
68387 CCAATATTGCTGAGATTTGGTTTGATGAATATATATATTTCAAGGAGCCTTTGTGCAAAAAATCA
129 CCAATATTGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCA
* * * * * *
68452 TGCTAATTTGAGTCGGGGCTCCGGAACGCGTTTTTAGCCAAAATCTGTGATGGTTACTACACAAT
194 TGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAAT
*
68517 TTCGACTAAAAACTGATCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATACACTTA-AAAATA
259 TTCGACTAAAAACTGACCCGAAAA-TTTTTTTCTCAATTTTTTGCCACAATACAC--AGAAAA-A
68581 TA
320 TA
* *
68583 TATAATTCAATGCCAAAAATATTGAC-AGGCTTTTCACGTTTCTAATATCG-TTTTCC--TTTTT
1 TATAATTCAATGCCAAAAATATTGACGA-ACTTTTCACGCTTCTAATATCGTTTTTCCATTTTTT
* *
68644 TCCGAATTAATTTCTAATTAAATCG-AACAAGATTGATATGCTGGAAAAAACAAATCCTTATATC
65 TCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATC
* * * * * * *
68708 CAATATTGTTAAGATTTGGTTTGATGATTATAGATATATCAAGGAGTCTTTGTGAAAAAAATCAT
130 CAATATTGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCAT
* * *
68773 GCAAAATTGAGCCGAGGCTCCGGAACCCGTTTTTAGCCAAAAACCGTGCTGGTTAGTACACAATT
195 GCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATT
* * * *
68838 TC-AGCTAAAAACTGACCCGAAAATTTTCTTGTCAA-ATTTTCCCA-AATACACAG-AAAATA
260 TCGA-CTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAATA
** * * *
68897 TATTTTTCAATGCCAAAAAAAATAGAC-AA---TTCACGCTTCTAATATCGTTTTTCTA-TTTTT
1 TATAATTCAATGCC-AAAAATATTGACGAACTTTTCACGCTTCTAATATCGTTTTTCCATTTTTT
68957 TCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAA-AAATCCTTATATC
65 TCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATC
* * * * *
69021 CAATATTGGTAAGATTTGGTTCGATTAATATATATATTTCAAGGAGTCTTTGTGCAAAAAATCAT
130 CAATATTGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCAT
* * * * *
69086 GCACAATTGAGCCGAGGCTCCGGAACGCGTTTTTAGTCAAAAAAAAAAAACGTGATTGTTAGTAC
195 GCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAG-C-----CAAAAACCGTGATGGTTAGTAC
* * * * *
69151 ACAATTTCGACTAAAAGCTGACCCCAAAAATTTTTTCTCAATTTTTTGCCACCATACACAAAAAA
254 ACAATTTCGACTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGAAAA
69216 ATA
319 ATA
* *
69219 TATATTTCAATGCCAAAAATATTGAC-AGACTTTTCACGCTTCTAATATCATTTTTCCA-TTTTT
1 TATAATTCAATGCCAAAAATATTGACGA-ACTTTTCACGCTTCTAATATCGTTTTTCCATTTTTT
69282 TCCGAATTAATTTCTAATTAAATCGAAACAAGCA-TGAGATGCTCGAAAAAACAAATCCTTATAT
65 TCCGAATTAATTTCTAATTAAATCGAAACAAG-ATTGAGATGCTCGAAAAAACAAATCCTTATAT
* * * * * *
69346 CCAATGTTGCAGAGATTTGATTCGATGAATGTAGATATTTCAAGGAATCTTTGAGCAAAAAATCT
129 CCAATATTGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCA
* * * * * *
69411 TGCAAAATTGAGCCAGGGCTCTGGAACGCATTTTTAACCAAAAACCATGATAGTTAGTACACAAT
194 TGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAAT
* * *
69476 TTCGACTAAAAACTGACCCGGAAAATTGTTTTCACAATTTTTTGCCATAATACACAGAAAATATA
259 TTCGACTAAAAACTGACCC-GAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGAAAA-ATA
* ** **
69541 TATAAATCAATGCCAAAAATATTGACGGGCTTTTCACATTTCTAATATCG-TTTTCCA--TTTTT
1 TATAATTCAATGCCAAAAATATTGACGAACTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTT
** * * **
69603 CTAAATTAATTTCTAATTAAATCGAAACAGGATTCAGATGCTCGAAAAAACAAATCCTTATATTT
66 CCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
* * * * *
69668 AATATTGCTAAGATTTGGTTCGATTAATATATATATTTC-A--A-T-TTTGTAGCCAAAAATCAT
131 AATATTGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGT-GCAAAAAATCAT
* * *
69728 GCAAAATTGAGACGGGGCTCCGGAACGCATTTTTAGCCAAAAACCGTGATGCTTAGTACACAATT
195 GCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATT
* * *
69793 TCGACTAAAAACTGACCCAAAAATATTATTTTTTTCTCAATTTTTTGTCACAATACACCGAAAAA
260 TCGACTAAAAACTGACCC--GAA-A--ATTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAA
69858 TA
320 TA
Statistics
Matches: 7162, Mismatches: 1357, Indels: 1315
0.73 0.14 0.13
Matches are distributed among these distances:
296 8 0.00
297 7 0.00
298 131 0.02
299 141 0.02
300 11 0.00
301 15 0.00
302 20 0.00
303 21 0.00
304 15 0.00
305 8 0.00
306 56 0.01
307 129 0.02
308 8 0.00
309 180 0.03
310 216 0.03
311 90 0.01
312 14 0.00
313 170 0.02
314 51 0.01
315 41 0.01
316 167 0.02
317 70 0.01
318 135 0.02
319 192 0.03
320 586 0.08
321 478 0.07
322 546 0.08
323 476 0.07
324 853 0.12
325 778 0.11
326 449 0.06
327 84 0.01
328 112 0.02
329 100 0.01
330 8 0.00
331 13 0.00
332 15 0.00
333 13 0.00
334 13 0.00
335 24 0.00
336 9 0.00
337 61 0.01
338 21 0.00
341 1 0.00
342 2 0.00
343 1 0.00
344 2 0.00
345 1 0.00
351 4 0.00
353 7 0.00
354 8 0.00
355 4 0.00
356 13 0.00
357 2 0.00
358 1 0.00
359 9 0.00
360 1 0.00
361 4 0.00
362 25 0.00
363 9 0.00
364 6 0.00
365 3 0.00
366 9 0.00
367 10 0.00
368 7 0.00
369 22 0.00
370 11 0.00
371 9 0.00
372 30 0.00
373 8 0.00
374 1 0.00
375 6 0.00
376 10 0.00
377 6 0.00
378 7 0.00
379 6 0.00
380 22 0.00
381 25 0.00
382 6 0.00
383 15 0.00
384 18 0.00
385 8 0.00
386 17 0.00
387 3 0.00
388 5 0.00
389 9 0.00
390 12 0.00
391 8 0.00
392 3 0.00
393 1 0.00
394 4 0.00
395 2 0.00
396 22 0.00
397 18 0.00
398 8 0.00
399 6 0.00
400 22 0.00
401 21 0.00
402 3 0.00
403 3 0.00
404 5 0.00
405 16 0.00
406 7 0.00
407 5 0.00
408 6 0.00
409 6 0.00
410 11 0.00
411 12 0.00
412 19 0.00
413 8 0.00
414 14 0.00
415 8 0.00
416 2 0.00
417 2 0.00
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (321 bp):
TATAATTCAATGCCAAAAATATTGACGAACTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTT
CCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
AATATTGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
CAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATTT
CGACTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAATA
Found at i:64363 original size:211 final size:213
Alignment explanation
Indices: 63999--64433 Score: 637
Period size: 211 Copynumber: 2.1 Consensus size: 213
63989 CCTTCTATTG
* *
63999 AATATTG-CTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGAAAAAAAATAA
1 AATATTGACGGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGAAAAAAAATAA
* *
64063 TGTAAAATTGAGCAGAGACTTCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTAAGTATAAAAC
66 TGCAAAATTGAGCAGAGACTCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTAAGTATAAAAC
* * * *
64128 TTCGACTAAAAACTAATCCGAAAATTTTTTTTCTTATTTTTTTGCCACAATAAACAGAAAACATA
131 TTCGACTAAAAACTAATCCGAAAATTATTTTTCTCAATTTTTTGCCACAATAAACAGAAAAAATA
*
64193 TATAATTTAATGCC-AAA
196 TATAATTCAATGCCAAAA
* *
64210 AATATTGACGGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTG-CAAAAAATCA
1 AATATTGACGGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGAAAAAAAATAA
* * * * *
64274 TGCAAAATTGAGTC-GGGGCTCCGGAACGCGTTTTTAGCCAAAATCCGTGATGGTTAGTA-AAAC
66 TGCAAAATTGAG-CAGAGACTCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTAAGTATAAA-
* * * *
64337 ATTTCGACTAAAAACTGATCCGAAAATTATTTTTCTCAATTTTTTGCCACAATACACATAAAAAA
129 ACTTCGACTAAAAACTAATCCGAAAATTATTTTTCTCAATTTTTTGCCACAATAAACAGAAAAAA
64402 TATATAATTCAATGCCAAAA
194 TATATAATTCAATGCCAAAA
64422 AATATTGACGGA
1 AATATTGACGGA
64434 TTTTTCACGC
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
210 3 0.01
211 137 0.69
212 60 0.30
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31
Consensus pattern (213 bp):
AATATTGACGGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGAAAAAAAATAA
TGCAAAATTGAGCAGAGACTCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTAAGTATAAAAC
TTCGACTAAAAACTAATCCGAAAATTATTTTTCTCAATTTTTTGCCACAATAAACAGAAAAAATA
TATAATTCAATGCCAAAA
Found at i:64704 original size:535 final size:536
Alignment explanation
Indices: 63686--64756 Score: 1542
Period size: 535 Copynumber: 2.0 Consensus size: 536
63676 AATGTTGCAC
* * * *
63686 AGATTTGATTCGATGAGTATTGATATTTCAAGGATTCTTTGTGCAAAAAATCATGCAAAATTGTG
1 AGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATGCAAAATTGAG
*
63751 TCGGGGCTCCGGAACGCGTTTCTAGCAAAAAACCATGATGGTTAGTACACAATTTCGACTAAAAA
66 TCGGGGCTCCGGAACGCGTTTCTAGCAAAAAACCATGATGGTTAGTAAACAATTTCGACTAAAAA
*
63816 GTAACCCGAAAAGTATTTTTCTCAATTTTTTGCCAAAATACACAAAAAAAAATATAATTCAATGC
131 CTAACCCGAAAAGTATTTTTCTCAATTTTTTGCCAAAATACACAAAAAAAAATATAATTCAATGC
* *
63881 CAAAAATATTGACGGGCTTTTCACGTTTCTAATATCGTTTTTCCATTTTTTTTCCAAATTAATTT
196 CAAAAATATTGACGGACTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTTCCAAATTAATTT
* * ** ** *
63946 CTAATTAAATCGAAACAAGATTCAGATGCTCCAAAAAACAAATCCTTCTATTGAATATTGCTGAG
261 CTAATTAAATCGAAAAAAGATTCAGATGCTCCAAAAAACAAATCCTTATATCCAATATTGCACAA
* *
64011 ATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGAAAAAAAATAATGTAAAATTGAGC
326 ATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGAAAAAAAATAATGCAAAATTGAGC
* * * *
64076 AGAGACTTCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTAAGTATAAAACTTCGACTAAAAAC
391 AGAGACTCCGAAACGCGTTTCTAGCAAAAAACCGTGATGGTAAGTACAAAACTTCGACTAAAAAC
* * * * * * * *
64141 TAATCCGAAAATTTTTTTTCTTATTTTTTTGCCACAATAAACA-G-AAAACATATATAATTTAAT
456 TAACCCGAAAAATATTTTTC-TAATTTTTTGCCAAAATAAACAGGAAAAAAAAATATAATTCAAT
64204 GCCAAAAATATTGACGG
520 GCCAAAAATATTGACGG
64221 AGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATGCAAAATTGAG
1 AGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATGCAAAATTGAG
* * * *
64286 TCGGGGCTCCGGAACGCGTTTTTAGCCAAAATCCGTGATGGTTAGTAAA-ACATTTCGACTAAAA
66 TCGGGGCTCCGGAACGCGTTTCTAGCAAAAAACCATGATGGTTAGTAAACA-ATTTCGACTAAAA
* * * * *
64350 ACTGATCCGAAAATTATTTTTCTCAATTTTTTGCCACAATACACATAAAAAATATATAATTCAAT
130 ACTAACCCGAAAAGTATTTTTCTCAATTTTTTGCCAAAATACACA-AAAAAAAATATAATTCAAT
* *
64415 GCCAAAAAATATTGACGGATTTTTCACGCTTCTAATATCGTTTTTCCA-TTTTTTTCCGAATTAA
194 GCC-AAAAATATTGACGGACTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTTCCAAATTAA
* * * *
64479 TTTCTAATTAATTCGAAAAAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATGTTGCA
258 TTTCTAATTAAATCGAAAAAAGATTCAGATGCTCCAAAAAACAAATCCTTATATCCAATATTGCA
* * *
64544 CAAATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTG-CAAAAAGTCATGCAAAATTG
323 CAAATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGAAAAAAAATAATGCAAAATTG
* * ** * * * *
64608 TGCCG-GGGTCCGGAACGCGTTTCTAGCAAAAAACCGTGATGGTTAGTACACAATTTCGACTAAA
388 AGCAGAGACTCCGAAACGCGTTTCTAGCAAAAAACCGTGATGGTAAGTACAAAACTTCGACTAAA
* *
64672 AAGTAACCCGAAAAATATTTTTCTCAATTTTTTGCCAAAATACACAGGAAAAAAAAATATAATTC
453 AACTAACCCGAAAAATATTTTTCT-AATTTTTTGCCAAAATAAACAGGAAAAAAAAATATAATTC
64737 AATGCCAAAAATATTGACGG
517 AATGCCAAAAATATTGACGG
64757 GCTTTTCACG
Statistics
Matches: 473, Mismatches: 57, Indels: 11
0.87 0.11 0.02
Matches are distributed among these distances:
533 1 0.00
534 87 0.18
535 178 0.38
536 166 0.35
537 41 0.09
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (536 bp):
AGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATGCAAAATTGAG
TCGGGGCTCCGGAACGCGTTTCTAGCAAAAAACCATGATGGTTAGTAAACAATTTCGACTAAAAA
CTAACCCGAAAAGTATTTTTCTCAATTTTTTGCCAAAATACACAAAAAAAAATATAATTCAATGC
CAAAAATATTGACGGACTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTTCCAAATTAATTT
CTAATTAAATCGAAAAAAGATTCAGATGCTCCAAAAAACAAATCCTTATATCCAATATTGCACAA
ATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGAAAAAAAATAATGCAAAATTGAGC
AGAGACTCCGAAACGCGTTTCTAGCAAAAAACCGTGATGGTAAGTACAAAACTTCGACTAAAAAC
TAACCCGAAAAATATTTTTCTAATTTTTTGCCAAAATAAACAGGAAAAAAAAATATAATTCAATG
CCAAAAATATTGACGG
Found at i:65020 original size:861 final size:860
Alignment explanation
Indices: 63350--65082 Score: 2992
Period size: 861 Copynumber: 2.0 Consensus size: 860
63340 CTTTTTATCC
* *
63350 AATATTG-CTGAGATTTGACTAGATGAATATAGATATTTCAAGGAGTTTTTGTGCAAAAAATAAT
1 AATATTGACGGAGATTTGACTAGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATAAT
* *
63414 GCAAAATTGAGCCGGGGCTCCGAAACGCATTTTTAGTCAAAAACCGTGATGGTTAGAACACAATT
66 GCAAAATTGAGCCGGGGCTCCGAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGAAAACAATT
* * *
63479 TCGACTAAAAGCTAACCCGAAATTTTTTTTCTCAATTTTTTGCCACAATACTCATAAAAAATATA
131 TCGACTAAAAACTAACCCGAAATTATTTTTCTCAATTTTTTGCCACAATACACATAAAAAATATA
*
63544 TAATTCAATGCCAAAAATATTGATGGACTTTTCACGCTTCTAATATCATTTTTCCATTTTTTTTT
196 TAATTCAATGCCAAAAATATTGACGGACTTTTCACGCTTCTAATATCATTTTTCCA-TTTTTTTT
* *
63609 CCGAATTAATTTCTAATTAAATCGAAACAGGATTGAGATGGCTCGGAAAAAACAAATCCTTATAT
260 CCGAATTAATTTCTAATTAAATCGAAAAAAGATTGAGATGGCTCGGAAAAAACAAATCCTTATAT
* * * * *
63674 GCAATGTTGCACAGATTTGATTCGATGAGTATTGATATTTCAAGGATTCTTTGTGCAAAAAATCA
325 CCAATGTTGCACAAATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCA
*
63739 TGCAAAATTGTGTCGGGGCTCCGGAACGCGTTTCTAGCAAAAAACCATGATGGTTAGTACACAAT
390 TGCAAAATTGTGCCGGGGCTCCGGAACGCGTTTCTAGCAAAAAACCATGATGGTTAGTACACAAT
*
63804 TTCGACTAAAAAGTAACCCGAAAAGTATTTTTCTCAATTTTTTGCCAAAATACACAAAAAAAAAT
455 TTCGACTAAAAAGTAACCCGAAAAATATTTTTCTCAATTTTTTGCCAAAATACACAAAAAAAAAT
*
63869 ATAATTCAATGCCAAAAATATTGACGGGCTTTTCACGTTTCTAATATCGTTTTTCCATTTTTTTT
520 ATAATTCAATGCCAAAAATATTGACGGGCTTTTCACGTTTCTAATATCATTTTTCCATTTTTTTT
*
63934 CCAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCCAAAAAACAAATCCTTCTATTG
585 ACAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCCAAAAAACAAATCCTTCTATTG
* *
63999 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGAAAAAAAATAAT
650 AATATTGCTGAGATTTGGTTCGATAAATATAGATATTTCAAGGAGTCTTAGTGAAAAAAAATAAT
64064 GTAAAATTGAGCAGAGACTTCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTAAGTATAAAACT
715 GTAAAATTGAGCAGAGACTTCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTAAGTATAAAACT
*
64129 TCGACTAAAAACTAATCCGAAAATTTTTTTTCTTATTTTTTTGCCACAATAAACAGAAAACATAT
780 TCGACTAAAAACTAATCCGAAAATTTTTTTTCTTAATTTTTTGCCACAATAAACAGAAAACATAT
64194 ATAATTTAATGCCAAA
845 ATAATTTAATGCCAAA
* * *
64210 AATATTGACGGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCAT
1 AATATTGACGGAGATTTGACTAGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATAAT
* * * *
64275 GCAAAATTGAGTCGGGGCTCCGGAACGCGTTTTTAGCCAAAATCCGTGATGGTTAGTAAAAC-AT
66 GCAAAATTGAGCCGGGGCTCCGAAACGCATTTTTAGCCAAAAACCGTGATGGTTAG-AAAACAAT
* *
64339 TTCGACTAAAAACTGATCCGAAAATTATTTTTCTCAATTTTTTGCCACAATACACATAAAAAATA
130 TTCGACTAAAAACTAACCCG-AAATTATTTTTCTCAATTTTTTGCCACAATACACATAAAAAATA
* *
64404 TATAATTCAATGCCAAAAAATATTGACGGATTTTTCACGCTTCTAATATCGTTTTTCCA-TTTTT
194 TATAATTCAATGCC-AAAAATATTGACGGACTTTTCACGCTTCTAATATCATTTTTCCATTTTTT
*
64468 TTCCGAATTAATTTCTAATTAATTCGAAAAAAGATTGAGAT-GCTC-GAAAAAACAAATCCTTAT
258 TTCCGAATTAATTTCTAATTAAATCGAAAAAAGATTGAGATGGCTCGGAAAAAACAAATCCTTAT
*
64531 ATCCAATGTTGCACAAATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAGT
323 ATCCAATGTTGCACAAATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAAT
*
64596 CATGCAAAATTGTGCCGGGG-TCCGGAACGCGTTTCTAGCAAAAAACCGTGATGGTTAGTACACA
388 CATGCAAAATTGTGCCGGGGCTCCGGAACGCGTTTCTAGCAAAAAACCATGATGGTTAGTACACA
64660 ATTTCGACTAAAAAGTAACCCGAAAAATATTTTTCTCAATTTTTTGCCAAAATACACAGGAAAAA
453 ATTTCGACTAAAAAGTAACCCGAAAAATATTTTTCTCAATTTTTTGCCAAAATACAC---AAAAA
64725 AAAATATAATTCAATGCCAAAAATATTGACGGGCTTTTCACGTTTCTAATATCATTTTTCCATTT
515 AAAATATAATTCAATGCCAAAAATATTGACGGGCTTTTCACGTTTCTAATATCATTTTTCCATTT
*
64790 TTTTTACAAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCCAAAAAACAAATCCTTC
580 TTTTTACAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCCAAAAAACAAATCCTTC
64855 TATTGAATATTGCTGAGATTTGGTTCGATAAATATAGATATTTCAAGGAGTCTTAGTGAAAAAAA
645 TATTGAATATTGCTGAGATTTGGTTCGATAAATATAGATATTTCAAGGAGTCTTAGTGAAAAAAA
* * *
64920 ATCATGTAAAATTGAGCCGAGGCTTCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTAAGTATA
710 ATAATGTAAAATTGAGCAGAGACTTCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTAAGTATA
*
64985 AAACTTCGACTAAAAACTAATTCGAAAATTTTTTTTCTTAATTTTTTGCCACAATAAACAGAAAA
775 AAACTTCGACTAAAAACTAATCCGAAAATTTTTTTTCTTAATTTTTTGCCACAATAAACAGAAAA
65050 CATATATAATTTAATGCCAAA
840 CATATATAATTTAATGCCAAA
65071 AATATTGACGGA
1 AATATTGACGGA
65083 TTTTTCACGC
Statistics
Matches: 825, Mismatches: 41, Indels: 13
0.94 0.05 0.01
Matches are distributed among these distances:
858 99 0.12
859 96 0.12
860 11 0.01
861 518 0.63
862 60 0.07
863 41 0.05
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (860 bp):
AATATTGACGGAGATTTGACTAGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATAAT
GCAAAATTGAGCCGGGGCTCCGAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGAAAACAATT
TCGACTAAAAACTAACCCGAAATTATTTTTCTCAATTTTTTGCCACAATACACATAAAAAATATA
TAATTCAATGCCAAAAATATTGACGGACTTTTCACGCTTCTAATATCATTTTTCCATTTTTTTTC
CGAATTAATTTCTAATTAAATCGAAAAAAGATTGAGATGGCTCGGAAAAAACAAATCCTTATATC
CAATGTTGCACAAATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCAT
GCAAAATTGTGCCGGGGCTCCGGAACGCGTTTCTAGCAAAAAACCATGATGGTTAGTACACAATT
TCGACTAAAAAGTAACCCGAAAAATATTTTTCTCAATTTTTTGCCAAAATACACAAAAAAAAATA
TAATTCAATGCCAAAAATATTGACGGGCTTTTCACGTTTCTAATATCATTTTTCCATTTTTTTTA
CAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCCAAAAAACAAATCCTTCTATTGA
ATATTGCTGAGATTTGGTTCGATAAATATAGATATTTCAAGGAGTCTTAGTGAAAAAAAATAATG
TAAAATTGAGCAGAGACTTCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTAAGTATAAAACTT
CGACTAAAAACTAATCCGAAAATTTTTTTTCTTAATTTTTTGCCACAATAAACAGAAAACATATA
TAATTTAATGCCAAA
Found at i:65059 original size:325 final size:323
Alignment explanation
Indices: 64210--69857 Score: 5921
Period size: 325 Copynumber: 17.6 Consensus size: 323
64200 TAATGCCAAA
* *
64210 AATATTGACGGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCAT
1 AATATTG-CTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCAT
* * *
64275 GCAAAATTGAGTCGGGGCTCCGGAACGCGTTTTTAGCCAAAATCCGTGATGGTTAGTA-AAACAT
65 GCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACA-AT
* *
64339 TTCGACTAAAAACTGATCCGAAAATTATTTTTCTCAATTTTTTGCCACAATACACATAAAAAATA
129 TTCGACTAAAAACTGATCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATA
* *
64404 TATAATTCAATGCCAAAAAATATTGACGGATTTTTCACGCTTCTAATATCGTTTTTCCATTTTTT
194 TATAATTCAATGCC-AAAAATATTGACGGACTTTTCACGCTTCTAATATCATTTTTCCATTTTTT
* *
64469 TCCGAATTAATTTCTAATTAATTCGAAAAAAGATTGAGATGCTCGAAAAAACAAATCCTTATATC
258 TCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATC
64534 C
323 C
* ** * * *
64535 AATGTTGCACAAATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAGTCATG
1 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
* * *
64600 CAAAATTGTGCCGGGG-TCCGGAACGCGTTTCTAGCAAAAAACCGTGATGGTTAGTACACAATTT
66 CAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATTT
* * * * * * *
64664 CGACTAAAAAGTAACCCGAAAAATATTTTTCTCAATTTTTTGCCAAAATACACAGGAAAAAAAAA
131 CGACTAAAAACTGATCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATACACA-G-AAAAAATA
* *
64729 TATAATTCAATGCCAAAAATATTGACGGGCTTTTCACGTTTCTAATATCATTTTTCCATTTTTTT
194 TATAATTCAATGCCAAAAATATTGACGGACTTTTCACGCTTCTAATATCATTTTTCCA-TTTTTT
* * * * *
64794 TACAAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCCAAAAAACAAATCCTTCTATT
258 TCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATC
*
64859 G
323 C
* * *
64860 AATATTGCTGAGATTTGGTTCGATAAATATAGATATTTCAAGGAGTCTTAGTGAAAAAAAATCAT
1 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTG-CAAAAAATCAT
* * * * * * * *
64925 GTAAAATTGAGCCGAGGCTTCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTAAGTATAAAACT
65 GCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATT
* * * * *
64990 TCGACTAAAAACTAATTCGAAAATTTTTTTTCTTAATTTTTTGCCACAATAAACAGAAAACATAT
130 TCGACTAAAAACTGATCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATAT
* * * *
65055 ATAATTTAATGCCAAAAATATTGACGGATTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTT
195 ATAATTCAATGCCAAAAATATTGACGGACTTTTCACGCTTCTAATATCATTTTTCCATTTTTTTC
* *
65120 CGAATTAATTTCTAATTAAATCGGAACAAGATTGAGATGCTCG-AAAAACAAATCCTTATATAC
260 CGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
* ** **
65183 AATGTTGCACAGATTTTATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
1 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
* ** * *
65248 CAAAATTGTGTTGAGGCTCCGGAACGCGTTTTTAGCCAAAATCCGTGATGGTTAGTACACAATTT
66 CAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATTT
* *
65313 CGACTAAAAACTGATCCGAAAATTATTTTTCTCAATTTTTTGCCACAATACACATAAAAAATATA
131 CGACTAAAAACTGATCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATATA
* * *
65378 TAATTCAATGCCAAAAAATATTGACGGATTTTTCACGTTTCTAATATCGTTTTTCCATTTTTTTC
196 TAATTCAATGCC-AAAAATATTGACGGACTTTTCACGCTTCTAATATCATTTTTCCATTTTTTTC
* *
65443 CGAATTAATTTCTTATTAAATCGAAAAAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
260 CGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
* ** *
65507 AATGTTGCACAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
1 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
* * * * *
65572 CAAAATTGTGTCGGGGCTCCGGAACGCGTTTCTAGCAAAAAACCCTGATGGTTAGTACACAATTT
66 CAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATTT
* * * * * * * * * *
65637 CGAGTAAAAAGTAACCCAAAAATTATTTTTCTTAATTTTTTGCCAAAATACATAGAAAAAAAATA
131 CGACTAAAAACTGATCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATATA
* *
65702 TAAATCAATGCCAAAAATATTGACGGGA-TTTTCAC-CTTTCTAATATCGTTTTTCCATTTTTTT
196 TAATTCAATGCCAAAAATATTGAC-GGACTTTTCACGC-TTCTAATATCATTTTTCCA-TTTTTT
* * * *
65765 TCCAAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCCAAAAAACAAATCCTTCTATT
258 TCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATC
*
65830 G
323 C
*
65831 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGAAAAAAAATCAT
1 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTG-CAAAAAATCAT
* * * * * * * * *
65896 GTAAAATTGAGCCGAGGCTTCGAAACGCGTTTTTAGCCAAAAACCGTGATGATAAGTATAAAACT
65 GCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATT
* * * *
65961 TCGACTAAAAACTAATCC-AAAAATTTTTTTCTTAATTTTTTGCCACAATAAACAGAAAAAA-AT
130 TCGACTAAAAACTGATCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATAT
* * * *
66024 ATATTTAAATGCCAAAAATATTGACGGACTTTTCACGTTTCTAATATCGTTTTTCCATTTTTTTT
195 ATAATTCAATGCCAAAAATATTGACGGACTTTTCACGCTTCTAATATCATTTTTCCA---TTTTT
* * * * * *
66089 TTCCAAATTAATTTCTGACTAAATTGAAACAAGATTGAGATGCTCGAAAAGACAAATCCTTACAT
257 TTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATAT
66154 CC
322 CC
* * * *
66156 AATATTGCGGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATA
1 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
* * * *
66221 CAAAATTGAGCCGGGGCTCCAGAACGCGTTTTTAGCTAAAAAACTGTGATAGTTAGTACACAATT
66 CAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGC-CAAAAACCGTGATGGTTAGTACACAATT
* * * * * * *
66286 TTGGCTAAAAACTGACCCGAAAATTTTTTTTTCTCAATTTTTTGCCACAACAAACATAAAATATA
130 TCGACTAAAAACTGATCCGAAAA-TTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATA
** *
66351 TATAATTCAATG-C-----------CGGA--AAT-ACGCTTCTAATATTATTTTTCCATTTTTTT
194 TATAATTCAATGCCAAAAATATTGACGGACTTTTCACGCTTCTAATATCATTTTTCCATTTTTTT
* * * *
66401 TCGAATTAATTTCTAATTACATCGAAATAAGATTGAGATGCTCGAAAAAACAAATCCTTACATCC
259 CCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
* * * * *
66466 TATATTGCTGAGATTTGGTTCGATGAATATATATATTTTAAGGAGCCTTTGTACAAAAAATCATG
1 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
* * * *
66531 CAAATTTGAGTCGGGGCTCCGGAACGCATTTTTAGCCAAAATCCGTGATGGTTAGTACACAATTT
66 CAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATTT
* *
66596 CGACTAAAAACTGATCCG-AAA-TTTTTTTCTCAATTTTTTGCCACAATACACATAAGAAATATA
131 CGACTAAAAACTGATCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATATA
*
66659 TAATTCAATGCCAAAAATATTGACAGACTTTTCACGCTTCTAATATCATTTTTCCA-TTTTTTCC
196 TAATTCAATGCCAAAAATATTGACGGACTTTTCACGCTTCTAATATCATTTTTCCATTTTTTTCC
* * *
66723 GAATTAATTTCTGATTAAATCGAAACAAGATTGAGATGCTCG-AAAAAGAAATCCTTATGTCC
261 GAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
** * * *
66785 AATATTGCAAAGATTTGGTTCGATTAATATATATATATATATATATATATATATATCAAGGAGAC
1 AATATTGCTGAGATTTGGTTCG--------------AT-GA-ATATAGATAT-T-TCAAGGAGTC
* * * * * * * *
66850 CTTGCGTC-AAAAATCATACAAAATTGAGTCGGGGCACCGGAATGCATTTTTAGCAAAAACACCG
48 TTTGTG-CAAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAA-ACCG
* * *
66914 TGATGG-T--T---CAA---C-A--AAAAACTGACCCGATAAA-TGTTTTTCTCAATTTTTTGTC
111 TGATGGTTAGTACACAATTTCGACTAAAAACTGATCCGA-AAATTTTTTTTCTCAATTTTTTGCC
* * * *
66966 ACAATACACCGAAAAAAAAATATAATTCAATGTCAAAAATATTGACAGG-CTTTTCACGTTTCTA
175 ACAATACACAG-AAAAAATATATAATTCAATGCCAAAAATATTGAC-GGACTTTTCACGCTTCTA
* * *
67030 ATATC-GTTTTCCA-TTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTGTGATGCTCG
238 ATATCATTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCG
* * *
67093 AAAAAACAAATCATTCTATCG
303 AAAAAACAAATCCTTATATCC
* * *
67114 AATATTGCTGAGATTTGGCTCGATGAATATAGATAATTCAGGGAGTCTTTGTGCAAAAAATCATG
1 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
* * * * * * *
67179 CATAATTGAGCCGAGGCTTCGGAATGCGTTTTTAGCCAAAAAACCATGATGGTAAGTATTA-AAT
66 CAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCC-AAAAACCGTGATGGTTAGTA-CACAAT
* * * *
67243 TACGACCAAAAACTGATCCGAAATTTGTTTTTTCTCAATTTTTTGCCACAATACACAGTAGAAAA
129 TTCGACTAAAAACTGATCCGAAAATT-TTTTTTCTCAATTTTTTGCCACAATACACAG-AAAAAA
* * * *
67308 TATATAATTTAATACCAAAAATATTGACGAACTTTACACGCTTCTAATATCATTTTTCCATTTTT
192 TATATAATTCAATGCCAAAAATATTGACGGACTTTTCACGCTTCTAATATCATTTTTCCATTTTT
*
67373 TTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCG-AAAAACAAATCCTTCTAT
257 TTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATAT
*
67437 CG
322 CC
* * *
67439 AATATTGCTGAGATTTGGCTCGATGAATATAGATCA-TTCAGGGAGTCTTTGGGCAAAAAATCAT
1 AATATTGCTGAGATTTGGTTCGATGAATATAGAT-ATTTCAAGGAGTCTTTGTGCAAAAAATCAT
* * * * * * * *
67503 GCATAATTGAGCCGAGGCTTCGGAACGCATTTTTAGCCAAAAAACCATGATGGTAAGTATAAAAT
65 GCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCC-AAAAACCGTGATGGTTAGTACACAAT
* * *
67568 TACGACTAAAAACTGATCCGAAATTTGTTTTTTCTCAATTTTTTGCCACAATACACAGTAGAAAA
129 TTCGACTAAAAACTGATCCGAAAATT-TTTTTTCTCAATTTTTTGCCACAATACACAG-AAAAAA
* * * *
67633 TATATAATTTAATACCAAAAATATTGACGGAGTTTTCACGCTTCTAATATCTTTTTTCCATTTTT
192 TATATAATTCAATGCCAAAAATATTGACGGACTTTTCACGCTTCTAATATCATTTTTCCATTTTT
* * *
67698 TT-CGAATTAATTTCTAATTAAATCGAAACAAGATTGACATGCTCGAAAAAACAAATCTTTACAT
257 TTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATAT
67762 CC
322 CC
*
67764 AATATTGCTGAGATTTGGTTCGATGAATAT--ATA--T-----AGTCTTTATGCAAAAAATCATG
1 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
* * * ** * * ** **
67820 CAAAATTGATCCGGGGCTTCGGAAAGACACAATTTT-GACTAAAAACTGATCCGAAATTTTTTTT
66 CAAAATTGAGCCGGGGCTCCGG--A-ACGCGTTTTTAG-CCAAAAACCG-T--G--ATGGTTAGT
* ** * * * * **
67884 TCTTAATTTCTTGCCAC-AAAACACAGA--AGAAAAATATATAAT-TCAA-----TGCCA-AA-A
122 ACACAATTTC--G--ACTAAAA-ACTGATCCG-AAAATTTTTTTTCTCAATTTTTTGCCACAATA
* *** ***** * * * ** * ** *
67938 -ATATTGACGGGCT-T--TTC-ACGCTTCTAATATCATTTTTC-CA-TTTT---TTTTCCGAAT-
181 CACAGAAAAAATATATAATTCAATGC--CAAAAAT-A-TTGACGGACTTTTCACGCTT-CTAATA
* * * *** ** * * ** * * **
67992 T-A-ATTTCTAATTAAAT-CGAAACAAGATT-GAGA-T-GCTCGAAA-AA-A--CAAAT-CT-TT
241 TCATTTTTCCATTTTTTTCCGAATTAA-TTTCTA-ATTAAATCGAAACAAGATTGAGATGCTCGA
* ** * * * **
68045 ACATCCAATATTGCTGAGATTT
304 AAAAACAA-A-TCCTTATATCC
** * * * * ** * *
68067 GGT-TCGATGA-ATAT-ATATATAT-ATATATATATATTTCAAGGAGTCTTTATGCAAAAAATCA
1 AATATTGCTGAGATTTGGT-TCGATGA-ATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCA
* * * * *
68128 TGCAAAATTGATCCGGGGCTTCGGAACGCATTTTTAGCCAAAAACCGTGATGATAAGTACACAAT
64 TGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAAT
* *
68193 TTCGACTAAAAACTGATCCG-AAATTTTTTTTCTTAATTTCTTGCCACAATACACAGAAAAAATA
129 TTCGACTAAAAACTGATCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATA
* *
68257 TATAATTCAATGCCGAAAATATTGACGGGCTTTTCACGCTTCTAATATCATTTTTCCATTTTTTT
194 TATAATTCAATGCCAAAAATATTGACGGACTTTTCACGCTTCTAATATCATTTTTCCA-TTTTTT
* * * * *
68322 TCCGAATAAATTTCTAATTAAATCGAAATAAGATTGAGCTGCTCGAAAACAAAAAATCCTTACAT
258 TCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAA-AACAAATCCTTATAT
68387 CC
322 CC
* * *
68389 AATATTGCTGAGATTTGGTTTGATGAATATATATATTTCAAGGAGCCTTTGTGCAAAAAATCATG
1 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
* * * * * *
68454 CTAATTTGAGTCGGGGCTCCGGAACGCGTTTTTAGCCAAAATCTGTGATGGTTACTACACAATTT
66 CAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATTT
**
68519 CGACTAAAAACTGATCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATACACTTAAAAATATAT
131 CGACTAAAAACTGATCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAA-ATAT
* *
68584 ATAATTCAATGCCAAAAATATTGACAGG-CTTTTCACGTTTCTAATATC-GTTTTCC--TTTTTT
195 ATAATTCAATGCCAAAAATATTGAC-GGACTTTTCACGCTTCTAATATCATTTTTCCATTTTTTT
* *
68645 CCGAATTAATTTCTAATTAAATCG-AACAAGATTGATATGCTGGAAAAAACAAATCCTTATATCC
259 CCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
* * * * * *
68709 AATATTGTTAAGATTTGGTTTGATGATTATAGATATATCAAGGAGTCTTTGTGAAAAAAATCATG
1 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
* * *
68774 CAAAATTGAGCCGAGGCTCCGGAACCCGTTTTTAGCCAAAAACCGTGCTGGTTAGTACACAATTT
66 CAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATTT
* * * * *
68839 C-AGCTAAAAACTGACCCGAAAA-TTTTCTTGTCAA-ATTTTCCCA-AATACACAG--AAAATAT
131 CGA-CTAAAAACTGATCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATAT
** * * ** * *
68898 ATTTTTCAATGCCAAAAAAAAT-A--GACAATTCACGCTTCTAATATCGTTTTTCTA-TTTTTTC
195 ATAATTCAATGCCAAAAATATTGACGGACTTTTCACGCTTCTAATATCATTTTTCCATTTTTTTC
68959 CGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAA-AAATCCTTATATCC
260 CGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
* * * *
69022 AATATTGGTAAGATTTGGTTCGATTAATATATATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
1 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
* * * * *
69087 CACAATTGAGCCGAGGCTCCGGAACGCGTTTTTAGTCAAAAAAAAAAAACGTGATTGTTAGTACA
66 CAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAG-C-----CAAAAACCGTGATGGTTAGTACA
* * * * *
69152 CAATTTCGACTAAAAGCTGACCCCAAAA-ATTTTTTCTCAATTTTTTGCCACCATACACA-AAAA
125 CAATTTCGACTAAAAACTGATCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAA
* *
69215 AATATATATTTCAATGCCAAAAATATTGACAGACTTTTCACGCTTCTAATATCATTTTTCCA-TT
190 AATATATAATTCAATGCCAAAAATATTGACGGACTTTTCACGCTTCTAATATCATTTTTCCATTT
69279 TTTTCCGAATTAATTTCTAATTAAATCGAAACAAGCA-TGAGATGCTCGAAAAAACAAATCCTTA
255 TTTTCCGAATTAATTTCTAATTAAATCGAAACAAG-ATTGAGATGCTCGAAAAAACAAATCCTTA
69343 TATCC
319 TATCC
* * * * * * *
69348 AATGTTGCAGAGATTTGATTCGATGAATGTAGATATTTCAAGGAATCTTTGAGCAAAAAATCTTG
1 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
* * * * * *
69413 CAAAATTGAGCCAGGGCTCTGGAACGCATTTTTAACCAAAAACCATGATAGTTAGTACACAATTT
66 CAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATTT
* * * * *
69478 CGACTAAAAACTGACCCGGAAAA-TTGTTTTCACAATTTTTTGCCATAATACACAGAAAATATAT
131 CGACTAAAAACTGATCC-GAAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATAT
* * ** *
69542 ATAAATCAATGCCAAAAATATTGACGGGCTTTTCACATTTCTAATATC-GTTTTCCA--TTTTTC
195 ATAATTCAATGCCAAAAATATTGACGGACTTTTCACGCTTCTAATATCATTTTTCCATTTTTTTC
** * * **
69604 TAAATTAATTTCTAATTAAATCGAAACAGGATTCAGATGCTCGAAAAAACAAATCCTTATATTT
260 CGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
* * * *
69668 AATATTGCTAAGATTTGGTTCGATTAATATATATATTTC-A--A-T-TTTGTAGCCAAAAATCAT
1 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGT-GCAAAAAATCAT
* * *
69728 GCAAAATTGAGACGGGGCTCCGGAACGCATTTTTAGCCAAAAACCGTGATGCTTAGTACACAATT
65 GCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATT
* * * *
69793 TCGACTAAAAACTGACCCAAAAATATTATTTTTTTCTCAATTTTTTGTCACAATACACCGAAAAA
130 TCGACTAAAAACTGATCC-GAAA-A-T-TTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAA
69858 TA
Statistics
Matches: 4490, Mismatches: 642, Indels: 387
0.81 0.12 0.07
Matches are distributed among these distances:
298 13 0.00
299 7 0.00
300 4 0.00
301 15 0.00
302 19 0.00
303 12 0.00
304 6 0.00
305 4 0.00
306 52 0.01
307 30 0.01
308 23 0.01
309 52 0.01
310 204 0.05
311 90 0.02
312 15 0.00
313 174 0.04
314 57 0.01
315 21 0.00
316 143 0.03
317 18 0.00
318 22 0.00
319 117 0.03
320 370 0.08
321 90 0.02
322 254 0.06
323 366 0.08
324 800 0.18
325 872 0.19
326 242 0.05
327 129 0.03
328 97 0.02
329 85 0.02
330 1 0.00
332 3 0.00
333 2 0.00
334 1 0.00
335 11 0.00
336 1 0.00
337 58 0.01
338 10 0.00
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (323 bp):
AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
CAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATTT
CGACTAAAAACTGATCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATATA
TAATTCAATGCCAAAAATATTGACGGACTTTTCACGCTTCTAATATCATTTTTCCATTTTTTTCC
GAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
Found at i:66204 original size:649 final size:645
Alignment explanation
Indices: 64210--69857 Score: 5897
Period size: 649 Copynumber: 8.8 Consensus size: 645
64200 TAATGCCAAA
* *
64210 AATATTGACGGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCAT
1 AATATTG-CTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCAT
* * *
64275 GCAAAATTGAGTCGGGGCTCCGGAACGCGTTTTTAGCCAAAATCCGTGATGGTTAGTA-AAACAT
65 GCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACA-AT
* * *
64339 TTCGACTAAAAACTGATCCGAAAATTATTTTTCTCAATTTTTTGCCACAATACACATAAAAAATA
129 TTCGACTAAAAACTGACCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATA
64404 TATAATTCAATGCCAAAAAATATTGACGGATTTTTCACGCTTCTAATATCGTTTTTCCA-TTTTT
194 TATAATTCAATGCC-AAAAATATTGACGGA-TTTTCACGCTTCTAATATCGTTTTTCCATTTTTT
* * *
64468 TTCCGAATTAATTTCTAATTAATTCGAAAAAAGATTGAGATGCTCGAAAAAACAAATCCTTATAT
257 TTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTCTAT
* ** * * *
64533 CCAATGTTGCACAAATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAGTCA
322 CCAATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCA
* * * *
64598 TGCAAAATTGTGCCG-GGGTCCGGAACGCGTTTCTAGCAAAAAACCGTGATGGTTAGTACACAAT
387 TGCAAAATTGAGCCGAGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAAT
* * * * *
64662 TTCGACTAAAAAGTAACCCGAAAAATATTTTTCTCAATTTTTTGCCAAAATACACAGGAAAAAAA
452 TTCGACTAAAAACTGATCCGAAAAATTTTTTTCTCAATTTTTTGCCACAATACACA-G--AAAAA
*
64727 AATATAATTCAATGCCAAAAATATTGACGGGCTTTTCACGTTTCTAATATCATTTTTCCATTTTT
514 AATATAATTCAATGCCAAAAATATTGACGGACTTTTCACGTTTCTAATATCATTTTTCCA-TTTT
* * * *
64792 TTTACAAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCCAAAAAACAAATCCTTCTA
578 TTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATA
**
64857 TTG
643 TCC
* * *
64860 AATATTGCTGAGATTTGGTTCGATAAATATAGATATTTCAAGGAGTCTTAGTGAAAAAAAATCAT
1 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTG-CAAAAAATCAT
* * * * * * * *
64925 GTAAAATTGAGCCGAGGCTTCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTAAGTATAAAACT
65 GCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATT
* ** * * *
64990 TCGACTAAAAACTAATTCGAAAATTTTTTTTCTTAATTTTTTGCCACAATAAACAGAAAACATAT
130 TCGACTAAAAACTGACCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATAT
*
65055 ATAATTTAATGCCAAAAATATTGACGGATTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTT
195 ATAATTCAATGCCAAAAATATTGACGGA-TTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTT
* * *
65120 -CGAATTAATTTCTAATTAAATCGGAACAAGATTGAGATGCTCG-AAAAACAAATCCTTATATAC
259 CCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTCTATCC
* ** **
65183 AATGTTGCACAGATTTTATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
324 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
* ** *
65248 CAAAATTGTGTTGAGGCTCCGGAACGCGTTTTTAGCCAAAATCCGTGATGGTTAGTACACAATTT
389 CAAAATTGAGCCGAGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATTT
*
65313 CGACTAAAAACTGATCCG-AAAATTATTTTTCTCAATTTTTTGCCACAATACACATAAAAAATAT
454 CGACTAAAAACTGATCCGAAAAATT-TTTTTCTCAATTTTTTGCCACAATACACAGAAAAAA-AT
* *
65377 ATAATTCAATGCCAAAAAATATTGACGGATTTTTCACGTTTCTAATATCGTTTTTCCATTTTTTT
517 ATAATTCAATGCC-AAAAATATTGACGGACTTTTCACGTTTCTAATATCATTTTTCCATTTTTTT
* *
65442 CCGAATTAATTTCTTATTAAATCGAAAAAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
581 CCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
* ** *
65507 AATGTTGCACAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
1 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
* * * * *
65572 CAAAATTGTGTCGGGGCTCCGGAACGCGTTTCTAGCAAAAAACCCTGATGGTTAGTACACAATTT
66 CAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATTT
* * * * * * * * *
65637 CGAGTAAAAAGTAACCCAAAAATTATTTTTCTTAATTTTTTGCCAAAATACATAGAAAAAAAATA
131 CGACTAAAAACTGACCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATATA
*
65702 TAAATCAATGCCAAAAATATTGACGGGATTTTCAC-CTTTCTAATATCGTTTTTCCATTTTTTTT
196 TAATTCAATGCCAAAAATATTGAC-GGATTTTCACGC-TTCTAATATCGTTTTTCCATTTTTTTT
* * **
65766 CCAAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCCAAAAAACAAATCCTTCTATTG
259 CCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTCTATCC
*
65831 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGAAAAAAAATCAT
324 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTG-CAAAAAATCAT
* * * * * * * *
65896 GTAAAATTGAGCCGAGGCTTCGAAACGCGTTTTTAGCCAAAAACCGTGATGATAAGTATAAAACT
388 GCAAAATTGAGCCGAGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATT
* * *
65961 TCGACTAAAAACTAATCC-AAAAATTTTTTTCTTAATTTTTTGCCACAATAAACAGAAAAAAATA
453 TCGACTAAAAACTGATCCGAAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAAATA
* * *
66025 TATTTAAATGCCAAAAATATTGACGGACTTTTCACGTTTCTAATATCGTTTTTCCATTTTTTTTT
518 TAATTCAATGCCAAAAATATTGACGGACTTTTCACGTTTCTAATATCATTTTTCCA---TTTTTT
* * * * * *
66090 TCCAAATTAATTTCTGACTAAATTGAAACAAGATTGAGATGCTCGAAAAGACAAATCCTTACATC
580 TCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATC
66155 C
645 C
* * * *
66156 AATATTGCGGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATA
1 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
* * * *
66221 CAAAATTGAGCCGGGGCTCCAGAACGCGTTTTTAGCTAAAAAACTGTGATAGTTAGTACACAATT
66 CAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGC-CAAAAACCGTGATGGTTAGTACACAATT
* * * * * *
66286 TTGGCTAAAAACTGACCCGAAAATTTTTTTTTCTCAATTTTTTGCCACAACAAACATAAAATATA
130 TCGACTAAAAACTGACCCGAAAA-TTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATA
** **
66351 TATAATTCAATG-C-----------CGGA-AAT-ACGCTTCTAATATTATTTTTCCATTTTTTTT
194 TATAATTCAATGCCAAAAATATTGACGGATTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTT
* *
66402 -CGAATTAATTTCTAATTACATCGAAATAAGATTGAGATGCTCGAAAAAACAAATCCTTAC-ATC
259 CCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTT-CTATC
* * * * *
66465 CTATATTGCTGAGATTTGGTTCGATGAATATATATATTTTAAGGAGCCTTTGTACAAAAAATCAT
323 CAATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCAT
* * * * *
66530 GCAAATTTGAGTCGGGGCTCCGGAACGCATTTTTAGCCAAAATCCGTGATGGTTAGTACACAATT
388 GCAAAATTGAGCCGAGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATT
* *
66595 TCGACTAAAAACTGATCCG--AAATTTTTTTCTCAATTTTTTGCCACAATACACATAAGAAATAT
453 TCGACTAAAAACTGATCCGAAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGAA-AAAAAT
* *
66658 ATAATTCAATGCCAAAAATATTGACAGACTTTTCACGCTTCTAATATCATTTTTCCA-TTTTTTC
517 ATAATTCAATGCCAAAAATATTGACGGACTTTTCACGTTTCTAATATCATTTTTCCATTTTTTTC
* * *
66722 CGAATTAATTTCTGATTAAATCGAAACAAGATTGAGATGCTCG-AAAAAGAAATCCTTATGTCC
582 CGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
** * * *
66785 AATATTGCAAAGATTTGGTTCGATTAATATATATATATATATATATATATATATATCAAGGAGAC
1 AATATTGCTGAGATTTGGTTCG--------------AT-GA-ATATAGATAT-T-TCAAGGAGTC
* * * * * * * *
66850 CTTGCGTC-AAAAATCATACAAAATTGAGTCGGGGCACCGGAATGCATTTTTAGCAAAAACACCG
48 TTTGTG-CAAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAA-ACCG
* *
66914 TGATGG-T--T---CAA---C-A--AAAAACTGACCCGATAAA-TGTTTTTCTCAATTTTTTGTC
111 TGATGGTTAGTACACAATTTCGACTAAAAACTGACCCGA-AAATTTTTTTTCTCAATTTTTTGCC
* * * * *
66966 ACAATACACCGAAAAAAAAATATAATTCAATGTCAAAAATATTGACAGGCTTTTCACGTTTCTAA
175 ACAATACACAG-AAAAAATATATAATTCAATGCCAAAAATATTGAC-GGATTTTCACGCTTCTAA
* *
67031 TATCG-TTTTCCA--TTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTGTGATGCTCG
238 TATCGTTTTTCCATTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCG
* * * * *
67093 AAAAAACAAATCATTCTATCGAATATTGCTGAGATTTGGCTCGATGAATATAGATAATTCAGGGA
303 AAAAAACAAATCCTTCTATCCAATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGA
* * *
67158 GTCTTTGTGCAAAAAATCATGCATAATTGAGCCGAGGCTTCGGAATGCGTTTTTAGCCAAAAAAC
368 GTCTTTGTGCAAAAAATCATGCAAAATTGAGCCGAGGCTCCGGAACGCGTTTTTAGCC-AAAAAC
* * * * * **
67223 CATGATGGTAAGTATTA-AATTACGACCAAAAACTGATCCGAAATTTGTTTTTTCTCAATTTTTT
432 CGTGATGGTTAGTA-CACAATTTCGACTAAAAACTGATCCGAAAAAT-TTTTTTCTCAATTTTTT
* * * * * *
67287 GCCACAATACACAGTAGAAAATATATAATTTAATACCAAAAATATTGACGAACTTTACACGCTTC
495 GCCACAATACACAG-A-AAAAAATATAATTCAATGCCAAAAATATTGACGGACTTTTCACGTTTC
67352 TAATATCATTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCT
558 TAATATCATTTTTCCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCT
* *
67417 CG-AAAAACAAATCCTTCTATCG
623 CGAAAAAACAAATCCTTATATCC
* * *
67439 AATATTGCTGAGATTTGGCTCGATGAATATAGATCA-TTCAGGGAGTCTTTGGGCAAAAAATCAT
1 AATATTGCTGAGATTTGGTTCGATGAATATAGAT-ATTTCAAGGAGTCTTTGTGCAAAAAATCAT
* * * * * * * *
67503 GCATAATTGAGCCGAGGCTTCGGAACGCATTTTTAGCCAAAAAACCATGATGGTAAGTATAAAAT
65 GCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCC-AAAAACCGTGATGGTTAGTACACAAT
* * * *
67568 TACGACTAAAAACTGATCCGAAATTTGTTTTTTCTCAATTTTTTGCCACAATACACAGTAGAAAA
129 TTCGACTAAAAACTGACCCGAAAATT-TTTTTTCTCAATTTTTTGCCACAATACACAG-AAAAAA
* * *
67633 TATATAATTTAATACCAAAAATATTGACGGAGTTTTCACGCTTCTAATATCTTTTTTCCA-TTTT
192 TATATAATTCAATGCCAAAAATATTGACGGA-TTTTCACGCTTCTAATATCGTTTTTCCATTTTT
* *
67697 TTT-CGAATTAATTTCTAATTAAATCGAAACAAGATTGACATGCTCGAAAAAACAAATCTTTAC-
256 TTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTT-CT
*
67760 ATCCAATATTGCTGAGATTTGGTTCGATGAATAT--ATA--T-----AGTCTTTATGCAAAAAAT
320 ATCCAATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAAT
* * * * ** * * **
67816 CATGCAAAATTGATCCGGGGCTTCGGAAAGACACAATTTT-GACTAAAAACTGATCCGAAATTTT
385 CATGCAAAATTGAGCCGAGGCTCCGG--A-ACGCGTTTTTAG-CCAAAAACCG-T--G--ATGGT
** * ** * * * **
67880 TTTTTCTTAATTTCTTGCCAC-AAAACACAGA--AGAAAAATATATAAT-TCAA-----TGCCA-
441 TAGTACACAATTTC--G--ACTAAAA-ACTGATCCGAAAAAT-TTTTTTCTCAATTTTTTGCCAC
* * ** ***** * * * ** * * *
67935 AAAATATTG-ACGGGCT-T--TTC-ACGCTTCTAATATCATTTTTC-CA-TTTT---TTTTCCGA
500 AATACACAGAAAAAAATATAATTCAATGC--CAAAAAT-A-TTGACGGACTTTTCACGTTT-CTA
* * * *** ** * * ** * *
67990 AT-T-A-ATTTCTAATTAAAT-CGAAACAAGATT-GAGA-T-GCTCGAAA-AA-A--CAAAT-CT
560 ATATCATTTTTCCATTTTTTTCCGAATTAA-TTTCTA-ATTAAATCGAAACAAGATTGAGATGCT
** * ** * * * **
68043 -TTACATCCAATATTGCTGAGATTT
623 CGAAAAAACAA-A-TCCTTATATCC
** * * * * ** * *
68067 GGT-TCGATGA-ATAT-ATATATAT-ATATATATATATTTCAAGGAGTCTTTATGCAAAAAATCA
1 AATATTGCTGAGATTTGGT-TCGATGA-ATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCA
* * * * *
68128 TGCAAAATTGATCCGGGGCTTCGGAACGCATTTTTAGCCAAAAACCGTGATGATAAGTACACAAT
64 TGCAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAAT
* * *
68193 TTCGACTAAAAACTGATCCG-AAATTTTTTTTCTTAATTTCTTGCCACAATACACAGAAAAAATA
129 TTCGACTAAAAACTGACCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATA
* * *
68257 TATAATTCAATGCCGAAAATATTGACGGGCTTTTCACGCTTCTAATATCATTTTTCCATTTTTTT
194 TATAATTCAATGCCAAAAATATTGAC-GGATTTTCACGCTTCTAATATCGTTTTTCCATTTTTTT
* * * *
68322 TCCGAATAAATTTCTAATTAAATCGAAATAAGATTGAGCTGCTCGAAAACAAAAAATCCTTAC-A
258 TCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAA-AACAAATCCTT-CTA
* * *
68386 TCCAATATTGCTGAGATTTGGTTTGATGAATATATATATTTCAAGGAGCCTTTGTGCAAAAAATC
321 TCCAATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATC
* * * * * * *
68451 ATGCTAATTTGAGTCGGGGCTCCGGAACGCGTTTTTAGCCAAAATCTGTGATGGTTACTACACAA
386 ATGCAAAATTGAGCCGAGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAA
* **
68516 TTTCGACTAAAAACTGATCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATACACTTAAAAATA
451 TTTCGACTAAAAACTGATCCGAAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAA-A
*
68581 TATATAATTCAATGCCAAAAATATTGACAGG-CTTTTCACGTTTCTAATATC-GTTTTCC--TTT
515 -ATATAATTCAATGCCAAAAATATTGAC-GGACTTTTCACGTTTCTAATATCATTTTTCCATTTT
* *
68642 TTTCCGAATTAATTTCTAATTAAATCG-AACAAGATTGATATGCTGGAAAAAACAAATCCTTATA
578 TTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATA
68706 TCC
643 TCC
* * * * * *
68709 AATATTGTTAAGATTTGGTTTGATGATTATAGATATATCAAGGAGTCTTTGTGAAAAAAATCATG
1 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
* * *
68774 CAAAATTGAGCCGAGGCTCCGGAACCCGTTTTTAGCCAAAAACCGTGCTGGTTAGTACACAATTT
66 CAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATTT
* * * *
68839 C-AGCTAAAAACTGACCCGAAAA-TTTTCTTGTCAA-ATTTTCCCA-AATACACAG--AAAATAT
131 CGA-CTAAAAACTGACCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATAT
** * * * *
68898 ATTTTTCAATGCCAAAAAAAATAGAC--A-ATTCACGCTTCTAATATCGTTTTT-C-TATTTTTT
195 ATAATTCAATGCC-AAAAATATTGACGGATTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTT
*
68958 CCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAA-AAATCCTTATATCC
259 CCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTCTATCC
* * * *
69022 AATATTGGTAAGATTTGGTTCGATTAATATATATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
324 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
* * * *
69087 CACAATTGAGCCGAGGCTCCGGAACGCGTTTTTAGTCAAAAAAAAAAAACGTGATTGTTAGTACA
389 CAAAATTGAGCCGAGGCTCCGGAACGCGTTTTTAG-C-----CAAAAACCGTGATGGTTAGTACA
* * * *
69152 CAATTTCGACTAAAAGCTGACCCCAAAAA-TTTTTTCTCAATTTTTTGCCACCATACACA-AAAA
448 CAATTTCGACTAAAAACTGATCCGAAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGAAAA
* * *
69215 AATATATATTTCAATGCCAAAAATATTGACAGACTTTTCACGCTTCTAATATCATTTTTCCA-TT
513 AA-ATATAATTCAATGCCAAAAATATTGACGGACTTTTCACGTTTCTAATATCATTTTTCCATTT
69279 TTTTCCGAATTAATTTCTAATTAAATCGAAACAAGCA-TGAGATGCTCGAAAAAACAAATCCTTA
577 TTTTCCGAATTAATTTCTAATTAAATCGAAACAAG-ATTGAGATGCTCGAAAAAACAAATCCTTA
69343 TATCC
641 TATCC
* * * * * * *
69348 AATGTTGCAGAGATTTGATTCGATGAATGTAGATATTTCAAGGAATCTTTGAGCAAAAAATCTTG
1 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
* * * * * *
69413 CAAAATTGAGCCAGGGCTCTGGAACGCATTTTTAACCAAAAACCATGATAGTTAGTACACAATTT
66 CAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATTT
* * * *
69478 CGACTAAAAACTGACCCGGAAAA-TTGTTTTCACAATTTTTTGCCATAATACACAGAAAATATAT
131 CGACTAAAAACTGACCC-GAAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATAT
* * **
69542 ATAAATCAATGCCAAAAATATTGACGGGCTTTTCACATTTCTAATATCG-TTTTCCA---TTTTT
195 ATAATTCAATGCCAAAAATATTGAC-GGATTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTT
** * * * **
69603 CTAAATTAATTTCTAATTAAATCGAAACAGGATTCAGATGCTCGAAAAAACAAATCCTTATATTT
259 CCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTCTATCC
* * * *
69668 AATATTGCTAAGATTTGGTTCGATTAATATATATATTTC-A--A-T-TTTGTAGCCAAAAATCAT
324 AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGT-GCAAAAAATCAT
* * * *
69728 GCAAAATTGAGACGGGGCTCCGGAACGCATTTTTAGCCAAAAACCGTGATGCTTAGTACACAATT
388 GCAAAATTGAGCCGAGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATT
* * * *
69793 TCGACTAAAAACTGACCCAAAAATATTATTTTTTTCTCAATTTTTTGTCACAATACACCGAAAAA
453 TCGACTAAAAACTGATCC-GAAA-A--ATTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAA
69858 TA
Statistics
Matches: 4180, Mismatches: 611, Indels: 422
0.80 0.12 0.08
Matches are distributed among these distances:
622 63 0.02
623 45 0.01
624 58 0.01
625 87 0.02
626 92 0.02
627 12 0.00
628 7 0.00
629 43 0.01
630 55 0.01
631 22 0.01
632 10 0.00
633 151 0.04
634 205 0.05
635 202 0.05
636 190 0.05
637 58 0.01
638 91 0.02
639 217 0.05
640 42 0.01
641 92 0.02
642 79 0.02
643 40 0.01
644 157 0.04
645 68 0.02
646 286 0.07
647 272 0.07
648 410 0.10
649 582 0.14
650 305 0.07
651 59 0.01
652 36 0.01
653 59 0.01
654 85 0.02
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (645 bp):
AATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATG
CAAAATTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATTT
CGACTAAAAACTGACCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAATATA
TAATTCAATGCCAAAAATATTGACGGATTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTTCC
GAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTCTATCCAA
TATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCAAAAAATCATGCA
AAATTGAGCCGAGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATTTCG
ACTAAAAACTGATCCGAAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGAAAAAAATATAA
TTCAATGCCAAAAATATTGACGGACTTTTCACGTTTCTAATATCATTTTTCCATTTTTTTCCGAA
TTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCC
Found at i:66818 original size:2 final size:2
Alignment explanation
Indices: 66811--66840 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
66801 GGTTCGATTA
66811 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
66841 CAAGGAGACC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:69474 original size:959 final size:959
Alignment explanation
Indices: 67952--69816 Score: 2594
Period size: 959 Copynumber: 1.9 Consensus size: 959
67942 TGACGGGCTT
*
67952 TTCACGCTTCTAATATCATTTTTCCATTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAG
1 TTCACGCTTCTAATATCATTTTTCCATATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAG
* *
68017 ATTGAGATGCTCGAAAAAACAAATCTTTACATCCAATATTGCTGAGATTTGGTTCGATGAATATA
66 ATTGAGATGCTCGAAAAAACAAATCCTTACATCCAATATTGCTAAGATTTGGTTC-A-G------
* *
68082 TATATATATATATATATATTTCAAGGAGTCTTTATGCAAAAAATCATGCAAAATTGATCCGGGGC
123 -A-ATATATATATATATATTTCAAGGAGTCTTTATGCAAAAAATCATGCAAAATTGAGCCGAGGC
* * * *
68147 TTCGGAACGCATTTTTAGCCAAAAACCGTGATGATAAGTACACAATTTCGACTAAAAACTGATCC
186 TCCGGAACGCATTTTTAGCAAAAAAACGTGATGATAAGTACACAATTTCGACTAAAAACTGACCC
* ** * *
68212 GAAATTTTTTTTCTTAATTTCTTGCCACAATACACAGAAAAAATATATAATTCAATGCCGAAAAT
251 CAAAAATTTTTTCTCAATTTCTTGCCACAATACACAGAAAAAATATATAATTCAATGCCAAAAAT
* *
68277 ATTGACGGGCTTTTCACGCTTCTAATATCATTTTTCCATTTTTTTTCCGAATAAATTTCTAATTA
316 ATTGACAGACTTTTCACGCTTCTAATATCATTTTTCCA-TTTTTTTCCGAATAAATTTCTAATTA
* * * *
68342 AATCGAAATAAGATTGAGCTGCTCGAAAACAAAAAATCCTTACATCCAATATTGCTGAGATTTGG
380 AATCGAAACAAGATTGAGATGCTCGAAAACAAAAAATCCTTACATCCAATATTGCAGAGATTTGA
* * * * * * * *
68407 TTTGATGAATATATATATTTCAAGGAGCCTTTGTGCAAAAAATCATGCTAATTTGAGTCGGGGCT
445 TTCGATGAATATAGATATTTCAAGGAACCTTTGAGCAAAAAATCATGCAAAATTGAGCCAGGGCT
* * * ** * *
68472 CCGGAACGCGTTTTTAGCCAAAATCTGTGATGGTTACTACACAATTTCGACTAAAAACTGATCC-
510 CCGGAACGCATTTTTAACCAAAAACCATGATAGTTACTACACAATTTCGACTAAAAACTGACCCG
* * *
68536 GAAAATTTTTTTTCTCAATTTTTTGCCACAATACACTTA-AAAATATATATAATTCAATGCCAAA
575 GAAAA-TTGTTTTCACAATTTTTTGCCACAATACAC--AGAAAATATATATAAATCAATGCCAAA
* * *
68600 AATATTGACAGGCTTTTCACGTTTCTAATATCGTTTTCCTTTTTTCCGAATTAATTTCTAATTAA
637 AATATTGACAGGCTTTTCACATTTCTAATATCGTTTTCCATTTTTCCAAATTAATTTCTAATTAA
* * * *
68665 ATCG-AACAAGATTGATATGCTGGAAAAAACAAATCCTTATATCCAATATTGTTAAGATTTGGTT
702 ATCGAAACAAGATTCAGATGCTCGAAAAAACAAATCCTTATATCCAATATTGCTAAGATTTGGTT
* * *
68729 TGATGATTATAGATATATCAAGGAGTCTTTGT-GAAAAAAATCATGCAAAATTGAGCCGAGGCTC
767 CGATGAATATAGATATATC-A--A-T-TTTGTAGAAAAAAATCATGCAAAATTGAGACGAGGCTC
* * * *
68793 CGGAACCCGTTTTTAGCCAAAAACCGTGCTGGTTAGTACACAATTTC-AGCTAAAAACTGACCCG
827 CGGAACCCATTTTTAGCCAAAAACCGTGATGCTTAGTACACAATTTCGA-CTAAAAACTGACCCA
68857 AAAATTTTCTTGTCAAATTTTCCCAAATACACAGAAAATATATTTTTCAATGCCAAAAAAAATAG
891 AAAATTTTCTTGTCAAATTTTCCCAAATACACAGAAAATATATTTTTCAATGCCAAAAAAAATAG
68922 ACAA
956 ACAA
*
68926 TTCACGCTTCTAATATCGTTTTT-C-TATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAG
1 TTCACGCTTCTAATATCATTTTTCCATATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAG
* *
68989 ATTGAGATGCTCGAAAAAA-AAATCCTTATATCCAATATTGGTAAGATTTGGTTC-G-AT-TA-A
66 ATTGAGATGCTCGAAAAAACAAATCCTTACATCCAATATTGCTAAGATTTGGTTCAGAATATATA
* *
69049 TATATATATTTCAAGGAGTCTTTGTGCAAAAAATCATGCACAATTGAGCCGAGGCTCCGGAACGC
131 TATATATATTTCAAGGAGTCTTTATGCAAAAAATCATGCAAAATTGAGCCGAGGCTCCGGAACGC
* * *
69114 GTTTTTAGTCAAAAAAAAAAAACGTGATTG-TTAGTACACAATTTCGACTAAAAGCTGACCCCAA
196 ATTTTTAG-C-----AAAAAAACGTGA-TGATAAGTACACAATTTCGACTAAAAACTGACCCCAA
* * *
69178 AAATTTTTTCTCAATTTTTTGCCACCATACACA-AAAAAATATATATTTCAATGCCAAAAATATT
254 AAATTTTTTCTCAATTTCTTGCCACAATACACAGAAAAAATATATAATTCAATGCCAAAAATATT
*
69242 GACAGACTTTTCACGCTTCTAATATCATTTTTCCA-TTTTTTCCGAATTAATTTCTAATTAAATC
319 GACAGACTTTTCACGCTTCTAATATCATTTTTCCATTTTTTTCCGAATAAATTTCTAATTAAATC
* * *
69306 GAAACAAGCA-TGAGATGCTCGAAAA-AACAAATCCTTATATCCAATGTTGCAGAGATTTGATTC
384 GAAACAAG-ATTGAGATGCTCGAAAACAAAAAATCCTTACATCCAATATTGCAGAGATTTGATTC
* * * *
69369 GATGAATGTAGATATTTCAAGGAATCTTTGAGCAAAAAATCTTGCAAAATTGAGCCAGGGCTCTG
448 GATGAATATAGATATTTCAAGGAACCTTTGAGCAAAAAATCATGCAAAATTGAGCCAGGGCTCCG
*
69434 GAACGCATTTTTAACCAAAAACCATGATAGTTAGTACACAATTTCGACTAAAAACTGACCCGGAA
513 GAACGCATTTTTAACCAAAAACCATGATAGTTACTACACAATTTCGACTAAAAACTGACCCGGAA
*
69499 AATTGTTTTCACAATTTTTTGCCATAATACACAGAAAATATATATAAATCAATGCCAAAAATATT
578 AATTGTTTTCACAATTTTTTGCCACAATACACAGAAAATATATATAAATCAATGCCAAAAATATT
* *
69564 GACGGGCTTTTCACATTTCTAATATCGTTTTCCATTTTTCTAAATTAATTTCTAATTAAATCGAA
643 GACAGGCTTTTCACATTTCTAATATCGTTTTCCATTTTTCCAAATTAATTTCTAATTAAATCGAA
* ** *
69629 ACAGGATTCAGATGCTCGAAAAAACAAATCCTTATATTTAATATTGCTAAGATTTGGTTCGATTA
708 ACAAGATTCAGATGCTCGAAAAAACAAATCCTTATATCCAATATTGCTAAGATTTGGTTCGATGA
* * ** * *
69694 ATATATATATTTCAATTTTGTAGCCAAAAATCATGCAAAATTGAGACGGGGCTCCGGAACGCATT
773 ATATAGATATATCAATTTTGTAGAAAAAAATCATGCAAAATTGAGACGAGGCTCCGGAACCCATT
69759 TTTAGCCAAAAACCGTGATGCTTAGTACACAATTTCGACTAAAAACTGACCCAAAAAT
838 TTTAGCCAAAAACCGTGATGCTTAGTACACAATTTCGACTAAAAACTGACCCAAAAAT
69817 ATTATTTTTT
Statistics
Matches: 793, Mismatches: 85, Indels: 45
0.86 0.09 0.05
Matches are distributed among these distances:
954 5 0.01
955 91 0.11
956 2 0.00
957 69 0.09
958 92 0.12
959 235 0.30
960 54 0.07
961 1 0.00
962 62 0.08
963 68 0.09
964 2 0.00
968 1 0.00
971 31 0.04
972 57 0.07
973 1 0.00
974 22 0.03
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.33
Consensus pattern (959 bp):
TTCACGCTTCTAATATCATTTTTCCATATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAG
ATTGAGATGCTCGAAAAAACAAATCCTTACATCCAATATTGCTAAGATTTGGTTCAGAATATATA
TATATATATTTCAAGGAGTCTTTATGCAAAAAATCATGCAAAATTGAGCCGAGGCTCCGGAACGC
ATTTTTAGCAAAAAAACGTGATGATAAGTACACAATTTCGACTAAAAACTGACCCCAAAAATTTT
TTCTCAATTTCTTGCCACAATACACAGAAAAAATATATAATTCAATGCCAAAAATATTGACAGAC
TTTTCACGCTTCTAATATCATTTTTCCATTTTTTTCCGAATAAATTTCTAATTAAATCGAAACAA
GATTGAGATGCTCGAAAACAAAAAATCCTTACATCCAATATTGCAGAGATTTGATTCGATGAATA
TAGATATTTCAAGGAACCTTTGAGCAAAAAATCATGCAAAATTGAGCCAGGGCTCCGGAACGCAT
TTTTAACCAAAAACCATGATAGTTACTACACAATTTCGACTAAAAACTGACCCGGAAAATTGTTT
TCACAATTTTTTGCCACAATACACAGAAAATATATATAAATCAATGCCAAAAATATTGACAGGCT
TTTCACATTTCTAATATCGTTTTCCATTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATT
CAGATGCTCGAAAAAACAAATCCTTATATCCAATATTGCTAAGATTTGGTTCGATGAATATAGAT
ATATCAATTTTGTAGAAAAAAATCATGCAAAATTGAGACGAGGCTCCGGAACCCATTTTTAGCCA
AAAACCGTGATGCTTAGTACACAATTTCGACTAAAAACTGACCCAAAAATTTTCTTGTCAAATTT
TCCCAAATACACAGAAAATATATTTTTCAATGCCAAAAAAAATAGACAA
Found at i:69475 original size:639 final size:633
Alignment explanation
Indices: 67846--69850 Score: 2420
Period size: 639 Copynumber: 3.1 Consensus size: 633
67836 CTTCGGAAAG
* * * * * * *
67846 ACACAATTTTGACTAAAAACTGATCCGAAAT-TTTTTTTTCTTAATTTCTTGCCACAAAACACAG
1 ACACAATTTCGACTAAAAACTGACCCGAAATATATTTTTTCTCAATTTTTTGCCACAATACAC-T
*
67910 AAGAAAAATATATAATTCAATGCCAAAAATATTGACGGGCTTTTCACGCTTCTAATATCATTTTT
65 AA-AAAAATATATAATTCAATGCCAAAAATATTGACAGGCTTTTCACGCTTCTAATATCATTTTT
67975 CCATTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAA
129 CCA--TTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAA
* * * *
68040 TCTTTACATCCAATATTGCTGAGATTTGGTTCGATGAATATATATATATATATATATATATTTCA
192 TCCTTATATCCAATATTGCAGAGATTTGGTTCGATG-------------A-ATATAGATATTTCA
*
68105 AGGAGTCTTT-ATGCAAAAAATCATGCAAAATTGATCCGGGGCT-TCGGAACGCATTTTTAGCCA
243 AGGAGTCTTTGA-GCAAAAAATCATGCAAAATTGAGCC-GGGCTCT-GGAACGCATTTTTAGCCA
* * * *
68168 AAAACCGTGATGATAAGTACACAATTTCGACTAAAAACTGATCCGAAATTTTTTTTCTTAATTTC
305 AAAACCGTGATG-TTAGTACACAATTTCGACTAAAAACTGACCCGAAAATTTTTTTC--AAATT-
* *
68233 TTGCCACAATACACAGAAAAAATATATAATTCAATGCCGAAAATATTGACGGGCTTTTCACGCTT
366 TTGCCACAATACACAG--AAAATATATTATTCAATGCCAAAAATATTGAC-GGCTTTTCACGCTT
* * * * *
68298 CTAATATCATTTTTCCATTTTTTTTCCGAATAAATTTCTAATTAAATCGAAATAAGATTGAGCTG
428 CTAATATCGTTTTT-C-TATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATG
* * * *
68363 CTCGAAAACAAAAAATCCTTACATCCAATATTGCTGAGATTTGGTTTGATGAATATATATATTTC
491 CTCG-AAA-AAAAAATCCTTATATCCAATATTGCTAAGATTTGGTTCGATTAATATATATATTTC
* * * *
68428 AAGGAGCCTTTGTGCAAAAAATCATGCTAATTTGAGTCGGGGCTCCGGAACGCGTTTTTAGCCAA
554 AAGGAGTCTTTGTGCAAAAAATCATGC-AAATTGAGACGGGGCTCCGGAACGCGTTTTTAGCAAA
* * *
68493 AATCTGTGATGGTTACT
618 AAAC-GTGATTGTTAGT
* *
68510 ACACAATTTCGACTAAAAACTGATCCGAAA-ATTTTTTTTCTCAATTTTTTGCCACAATACACTT
1 ACACAATTTCGACTAAAAACTGACCCGAAATATATTTTTTCTCAATTTTTTGCCACAATACAC-T
* * *
68574 AAAAATATATATAATTCAATGCCAAAAATATTGACAGGCTTTTCACGTTTCTAATATC-GTTTTC
65 AAAAAAATATATAATTCAATGCCAAAAATATTGACAGGCTTTTCACGCTTCTAATATCATTTTTC
* *
68638 C-TTTTTTCCGAATTAATTTCTAATTAAATCG-AACAAGATTGATATGCTGGAAAAAACAAATCC
130 CATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCC
* * * * * *
68701 TTATATCCAATATTGTTA-AGATTTGGTTTGATGATTATAGATATATCAAGGAGTCTTTGTGAAA
195 TTATATCCAATATTG-CAGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGAGCAA
* * * *
68765 AAAATCATGCAAAATTGAGCCGAGGCTCCGGAACCCGTTTTTAGCCAAAAACCGTGCTGGTTAGT
259 AAAATCATGCAAAATTGAGCCG-GGCTCTGGAACGCATTTTTAGCCAAAAACCGTGAT-GTTAGT
*
68830 ACACAATTTC-AGCTAAAAACTGACCCGAAAATTTTCTTGTCAAATTTTCCCA-AATACACAGAA
322 ACACAATTTCGA-CTAAAAACTGACCCGAAAATTTT-TT-TCAAATTTTGCCACAATACACAGAA
* * * * **
68893 AATATATTTTTCAATGCCAAAAAAAAT-A-GACAATTCACGCTTCTAATATCGTTTTTCTATTTT
384 AATATATTATTCAATGCCAAAAATATTGACGGCTTTTCACGCTTCTAATATCGTTTTTCTATTTT
68956 TTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAAAATCCTTATATC
449 TTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAAAATCCTTATATC
*
69021 CAATATTGGTAAGATTTGGTTCGATTAATATATATATTTCAAGGAGTCTTTGTGCAAAAAATCAT
514 CAATATTGCTAAGATTTGGTTCGATTAATATATATATTTCAAGGAGTCTTTGTGCAAAAAATCAT
* *
69086 GCACAATTGAGCCGAGGCTCCGGAACGCGTTTTTAGTCAAAAAAAAAAAACGTGATTGTTAGT
579 GCA-AATTGAGACGGGGCTCCGGAACGCGTTTTTAG-C------AAAAAACGTGATTGTTAGT
* * *
69149 ACACAATTTCGACTAAAAGCTGACCCCAAA-A-ATTTTTTCTCAATTTTTTGCCACCATACAC-A
1 ACACAATTTCGACTAAAAACTGACCCGAAATATATTTTTTCTCAATTTTTTGCCACAATACACTA
* *
69211 AAAAAATATATATTTCAATGCCAAAAATATTGACAGACTTTTCACGCTTCTAATATCATTTTTCC
66 AAAAAATATATAATTCAATGCCAAAAATATTGACAGGCTTTTCACGCTTCTAATATCATTTTTCC
69276 ATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGCA-TGAGATGCTCGAAAAAACAAATCC
131 ATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAG-ATTGAGATGCTCGAAAAAACAAATCC
* * * *
69340 TTATATCCAATGTTGCAGAGATTTGATTCGATGAATGTAGATATTTCAAGGAATCTTTGAGCAAA
195 TTATATCCAATATTGCAGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGAGCAAA
* * *
69405 AAATCTTGCAAAATTGAGCCAGGGCTCTGGAACGCATTTTTAACCAAAAACCATGATAGTTAGTA
260 AAATCATGCAAAATTGAGCC-GGGCTCTGGAACGCATTTTTAGCCAAAAACCGTGAT-GTTAGTA
* *
69470 CACAATTTCGACTAAAAACTGACCCGGAAAATTGTTTTCACAATTTTTTGCCATAATACACAGAA
323 CACAATTTCGACTAAAAACTGACCC-GAAAATTTTTTTCA-AA--TTTTGCCACAATACACAGAA
* ** *
69535 AATATATATAAATCAATGCCAAAAATATTGACGGGCTTTTCACATTTCTAATATCG-TTTTCCA-
384 AATATAT-T-ATTCAATGCCAAAAATATTGAC-GGCTTTTCACGCTTCTAATATCGTTTTTCTAT
** * *
69598 TTTTTCTAAATTAATTTCTAATTAAATCGAAACAGGATTCAGATGCTCGAAAAAACAAATCCTTA
446 TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAA-AAATCCTTA
** *
69663 TATTTAATATTGCTAAGATTTGGTTCGATTAATATATATATTTC-A--A-T-TTTGTAGCCAAAA
510 TATCCAATATTGCTAAGATTTGGTTCGATTAATATATATATTTCAAGGAGTCTTTGT-GCAAAAA
* *
69723 ATCATGCAAAATTGAGACGGGGCTCCGGAACGCATTTTTAGCCAAAAACCGTGA-TGCTTAGT
574 ATCATGC-AAATTGAGACGGGGCTCCGGAACGCGTTTTTAG-CAAAAAACGTGATTG-TTAGT
* *
69785 ACACAATTTCGACTAAAAACTGACCCAAAAATATTATTTTTTTCTCAATTTTTTGTCACAATACA
1 ACACAATTTCGACTAAAAACTGACCC-GAAATA-TA-TTTTTTCTCAATTTTTTGCCACAATACA
69850 C
63 C
69851 CGAAAAATA
Statistics
Matches: 1181, Mismatches: 117, Indels: 109
0.84 0.08 0.08
Matches are distributed among these distances:
632 1 0.00
633 106 0.09
634 4 0.00
635 50 0.04
636 95 0.08
637 33 0.03
638 63 0.05
639 202 0.17
640 41 0.03
641 39 0.03
642 71 0.06
643 10 0.01
644 128 0.11
645 57 0.05
646 58 0.05
647 18 0.02
658 57 0.05
659 30 0.03
662 6 0.01
663 53 0.04
664 59 0.05
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (633 bp):
ACACAATTTCGACTAAAAACTGACCCGAAATATATTTTTTCTCAATTTTTTGCCACAATACACTA
AAAAAATATATAATTCAATGCCAAAAATATTGACAGGCTTTTCACGCTTCTAATATCATTTTTCC
ATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCT
TATATCCAATATTGCAGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGAGCAAAA
AATCATGCAAAATTGAGCCGGGCTCTGGAACGCATTTTTAGCCAAAAACCGTGATGTTAGTACAC
AATTTCGACTAAAAACTGACCCGAAAATTTTTTTCAAATTTTGCCACAATACACAGAAAATATAT
TATTCAATGCCAAAAATATTGACGGCTTTTCACGCTTCTAATATCGTTTTTCTATTTTTTCCGAA
TTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAAAAATCCTTATATCCAATATT
GCTAAGATTTGGTTCGATTAATATATATATTTCAAGGAGTCTTTGTGCAAAAAATCATGCAAATT
GAGACGGGGCTCCGGAACGCGTTTTTAGCAAAAAACGTGATTGTTAGT
Found at i:69625 original size:320 final size:318
Alignment explanation
Indices: 67846--69856 Score: 2374
Period size: 320 Copynumber: 6.2 Consensus size: 318
67836 CTTCGGAAAG
* * * * * *
67846 ACACAATTTTGACTAAAAACTGATCCGAAATTTTTTTTTCTTAATTTCTTGCCACAAAACACAGA
1 ACACAATTTCGACTAAAAACTGACCCGAAA-ATTTTTTTCTCAATTTTTTGCCACAATACACAG-
* * *
67911 AGAAAAATATATAATTCAATGCCAAAAATATTGACGGGCTTTTCACGCTTCTAATATCATTTTTC
64 A-AAATATATATAATTCAATGCCAAAAATATTGACAGGCTTTTCACGCTTCTAATATC-GTTTTC
67976 CATTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAAT
127 CA--TTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAAT
* * *
68041 CTTTACATCCAATATTGCTGAGATTTGGTTCGATGAATATATATATATATATATATATATTTCAA
190 CCTTATATCCAATATTGC-AAGATTTGGTTCGATG-------------A-ATATATATATTTCAA
* *
68106 GGAGTCTTT-ATGCAAAAAATCATGCAAAATTGATCCGGGGCTTCGGAACGCATTTTTAGCCAAA
240 GGAGTCTTTGA-GCAAAAAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCATTTTTAGCCAAA
*
68170 AACCGTGATGATAAGT
304 AACCGTGATG-TTAGT
* * * *
68186 ACACAATTTCGACTAAAAACTGATCCGAAATTTTTTTTCTTAATTTCTTGCCACAATACACAGAA
1 ACACAATTTCGACTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGAA
* * * *
68251 AAAATATATAATTCAATGCCGAAAATATTGACGGGCTTTTCACGCTTCTAATATCATTTTTCCAT
66 AATATATATAATTCAATGCCAAAAATATTGACAGGCTTTTCACGCTTCTAATATC-GTTTTCCA-
* * * *
68316 TTTTTTTCCGAATAAATTTCTAATTAAATCGAAATAAGATTGAGCTGCTCGAAAACAAAAAATCC
129 -TTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAA-AACAAATCC
* * * * *
68381 TTACATCCAATATTGCTGAGATTTGGTTTGATGAATATATATATTTCAAGGAGCCTTTGTGCAAA
192 TTATATCCAATATTGC-AAGATTTGGTTCGATGAATATATATATTTCAAGGAGTCTTTGAGCAAA
* * * * * * *
68446 AAATCATGCTAATTTGAGTCGGGGCTCCGGAACGCGTTTTTAGCCAAAATCTGTGATGGTTACT
256 AAATCATGCAAAATTGAGCCGGGGCTCCGGAACGCATTTTTAGCCAAAAACCGTGAT-GTTAGT
*
68510 ACACAATTTCGACTAAAAACTGATCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATACACTTA
1 ACACAATTTCGACTAAAAACTGACCCGAAAA-TTTTTTTCTCAATTTTTTGCCACAATACAC--A
*
68575 -AAAATATATATAATTCAATGCCAAAAATATTGACAGGCTTTTCACGTTTCTAATATCGTTTTCC
63 GAAAATATATATAATTCAATGCCAAAAATATTGACAGGCTTTTCACGCTTCTAATATCGTTTTCC
* *
68639 -TTTTTTCCGAATTAATTTCTAATTAAATCG-AACAAGATTGATATGCTGGAAAAAACAAATCCT
128 ATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCT
* * * * * * *
68702 TATATCCAATATTGTTAAGATTTGGTTTGATGATTATAGATATATCAAGGAGTCTTTGTGAAAAA
193 TATATCCAATATTG-CAAGATTTGGTTCGATGAATATATATATTTCAAGGAGTCTTTGAGCAAAA
* * * *
68767 AATCATGCAAAATTGAGCCGAGGCTCCGGAACCCGTTTTTAGCCAAAAACCGTGCTGGTTAGT
257 AATCATGCAAAATTGAGCCGGGGCTCCGGAACGCATTTTTAGCCAAAAACCGTGAT-GTTAGT
* * * *
68830 ACACAATTTC-AGCTAAAAACTGACCCGAAAATTTTCTTGTCAA-ATTTTCCCA-AATACACAGA
1 ACACAATTTCGA-CTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGA
* * * * *
68892 AAATATAT-T-TTTCAATGCCAAAAAAAATAGACA----ATTCACGCTTCTAATATCGTTTTTCT
65 AAATATATATAATTCAATGCC-AAAAATATTGACAGGCTTTTCACGCTTCTAATATCG-TTTTCC
68951 ATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAA-AAATCCT
128 ATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCT
* * *
69015 TATATCCAATATTGGTAAGATTTGGTTCGATTAATATATATATTTCAAGGAGTCTTTGTGCAAAA
193 TATATCCAATATT-GCAAGATTTGGTTCGATGAATATATATATTTCAAGGAGTCTTTGAGCAAAA
* * * * *
69080 AATCATGCACAATTGAGCCGAGGCTCCGGAACGCGTTTTTAGTCAAAAAAAAAAAACGTGATTGT
257 AATCATGCAAAATTGAGCCGGGGCTCCGGAACGCATTTTTAG-C-----CAAAAACCGTGA-TGT
69145 TAGT
315 TAGT
* * * *
69149 ACACAATTTCGACTAAAAGCTGACCCCAAAAATTTTTTCTCAATTTTTTGCCACCATACACA-AA
1 ACACAATTTCGACTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGAA
* * * *
69213 AAAATATATATTTCAATGCCAAAAATATTGACAGACTTTTCACGCTTCTAATATCATTTTTCCAT
66 AATATATATAATTCAATGCCAAAAATATTGACAGGCTTTTCACGCTTCTAATATC-GTTTTCCAT
69278 TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGCA-TGAGATGCTCGAAAAAACAAATCCTT
130 TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAG-ATTGAGATGCTCGAAAAAACAAATCCTT
* * * * *
69342 ATATCCAATGTTGCAGAGATTTGATTCGATGAATGTAGATATTTCAAGGAATCTTTGAGCAAAAA
194 ATATCCAATATTGCA-AGATTTGGTTCGATGAATATATATATTTCAAGGAGTCTTTGAGCAAAAA
* * * * *
69407 ATCTTGCAAAATTGAGCCAGGGCTCTGGAACGCATTTTTAACCAAAAACCATGATAGTTAGT
258 ATCATGCAAAATTGAGCCGGGGCTCCGGAACGCATTTTTAGCCAAAAACCGTGAT-GTTAGT
* * *
69469 ACACAATTTCGACTAAAAACTGACCCGGAAAATTGTTTTCACAATTTTTTGCCATAATACACAGA
1 ACACAATTTCGACTAAAAACTGACCC-GAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGA
* * **
69534 AAATATATATAAATCAATGCCAAAAATATTGACGGGCTTTTCACATTTCTAATATCGTTTTCCA-
65 AAATATATATAATTCAATGCCAAAAATATTGACAGGCTTTTCACGCTTCTAATATCGTTTTCCAT
** * *
69598 TTTTTCTAAATTAATTTCTAATTAAATCGAAACAGGATTCAGATGCTCGAAAAAACAAATCCTTA
130 TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTA
** * *
69663 TATTTAATATTGCTAAGATTTGGTTCGATTAATATATATATTTC-A--A-T-TTTGTAGCCAAAA
195 TATCCAATATTGC-AAGATTTGGTTCGATGAATATATATATTTCAAGGAGTCTTTG-AGCAAAAA
*
69723 ATCATGCAAAATTGAGACGGGGCTCCGGAACGCATTTTTAGCCAAAAACCGTGATGCTTAGT
258 ATCATGCAAAATTGAGCCGGGGCTCCGGAACGCATTTTTAGCCAAAAACCGTGATG-TTAGT
* *
69785 ACACAATTTCGACTAAAAACTGACCCAAAAATATTATTTTTTTCTCAATTTTTTGTCACAATACA
1 ACACAATTTCGACTAAAAACTGACCC--GAA-A--ATTTTTTTCTCAATTTTTTGCCACAATACA
*
69850 CCGAAAA
61 CAGAAAA
69857 ATA
Statistics
Matches: 1478, Mismatches: 148, Indels: 110
0.85 0.09 0.06
Matches are distributed among these distances:
311 17 0.01
312 5 0.00
313 134 0.09
314 34 0.02
315 18 0.01
316 97 0.07
317 10 0.01
318 8 0.01
319 65 0.04
320 330 0.22
321 76 0.05
322 89 0.06
324 110 0.07
325 116 0.08
326 150 0.10
327 1 0.00
337 117 0.08
338 40 0.03
339 32 0.02
340 29 0.02
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (318 bp):
ACACAATTTCGACTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACACAGAA
AATATATATAATTCAATGCCAAAAATATTGACAGGCTTTTCACGCTTCTAATATCGTTTTCCATT
TTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTAT
ATCCAATATTGCAAGATTTGGTTCGATGAATATATATATTTCAAGGAGTCTTTGAGCAAAAAATC
ATGCAAAATTGAGCCGGGGCTCCGGAACGCATTTTTAGCCAAAAACCGTGATGTTAGT
Done.