Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009832.1 Corchorus capsularis cultivar CVL-1 contig09853, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13677

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--4672
323
14.5
321
85
5
6067
36
16
14
33
1.88
1--4675
973
4.8
968
88
4
6450
36
16
14
33
1.88
1--4675
645
7.3
643
85
4
5967
36
16
14
33
1.88
5020--5266
78
3.2
78
90
3
356
36
12
1
49
1.50
5325--5368
23
1.9
23
85
0
61
38
6
4
50
1.50
6092--6198
53
2.0
53
94
0
187
42
12
4
41
1.63
8108--9107
491
2.0
495
96
2
1828
21
26
18
33
1.96
12090--12115
4
6.5
4
100
0
52
50
23
0
26
1.50
12612--12658
21
2.2
21
85
11
60
10
21
10
57
1.62
13619--13677
2
30.0
2
96
3
111
49
0
50
0
1.00

Tables:   1

The End!