Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01009836.1 Corchorus capsularis cultivar CVL-1 contig09857, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44415
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:7 original size:2 final size:2
Alignment explanation
Indices: 1--33 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
34 GTAGTCCGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:33897 original size:42 final size:42
Alignment explanation
Indices: 33838--33922 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
33828 ATGACTGAAA
33838 CTGTAACTCTTCCTCGGACCTCGGTTGTGTCCGACTTCTGAG
1 CTGTAACTCTTCCTCGGACCTCGGTTGTGTCCGACTTCTGAG
33880 CTGTAACTCTTCCTCGGACCTCGGTTGTGTCCGACTTCTGAG
1 CTGTAACTCTTCCTCGGACCTCGGTTGTGTCCGACTTCTGAG
33922 C
1 C
33923 CAGCCAGAGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.12, C:0.32, G:0.24, T:0.33
Consensus pattern (42 bp):
CTGTAACTCTTCCTCGGACCTCGGTTGTGTCCGACTTCTGAG
Found at i:35749 original size:45 final size:45
Alignment explanation
Indices: 35693--35782 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
35683 GATTACTTCT
35693 CCAACTTATCATTAA-TCCAGGATAGGGATCTTTTAGTAATTCCAC
1 CCAACTTATCATTAATTCCAGG-TAGGGATCTTTTAGTAATTCCAC
* *
35738 CCAATTTATCATTAATTCGAGGTAGGGATCTTTTAGTAATTCCAC
1 CCAACTTATCATTAATTCCAGGTAGGGATCTTTTAGTAATTCCAC
35783 TACTCTATTA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
45 37 0.88
46 5 0.12
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (45 bp):
CCAACTTATCATTAATTCCAGGTAGGGATCTTTTAGTAATTCCAC
Found at i:37368 original size:3 final size:3
Alignment explanation
Indices: 37360--37402 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
37350 AAGGTCACAC
37360 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
37403 ATGCAAGGTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:38536 original size:2 final size:2
Alignment explanation
Indices: 38531--38555 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
38521 TTTTTTTTTA
38531 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
38556 AATAGTATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:41036 original size:2 final size:2
Alignment explanation
Indices: 41029--41070 Score: 50
Period size: 2 Copynumber: 21.0 Consensus size: 2
41019 ATTTACATGC
* *
41029 AT AT AT AT AT AA AT -T AT AC AGT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT
41071 TAATTTATCT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
1 1 0.03
2 32 0.94
3 1 0.03
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (2 bp):
AT
Found at i:42869 original size:323 final size:321
Alignment explanation
Indices: 42080--43246 Score: 1525
Period size: 324 Copynumber: 3.6 Consensus size: 321
42070 AGAAAATAAT
* * * * * *
42080 TAACCATCACTATTATTGGGCTAGAAACGCGTTTTGGGGCCCCGACTCAGTTTTGCATGATTTTT
1 TAACCATCACTGTTATTGGTCTAAAAACGCGTTTCGGAGCCCCGGCTCAGTTTTGCATGATTTTT
* * * * * *
42145 GGCA-AATAACATCCTTGAAATATCTCTATTCATCGAACCGAATCCCACCCACATTGGATATAAG
66 GGCAGAAT-ACCTCCTTGAAATATCTCTATTCATCGAACCAAATCTCAGCCACAATGGATTTAAG
* * * *
42209 GATTTGTTTTTACAAGCATCTAAATTTTGTTTCGATTTAATTAGTAATAAATTCGGAAAAATGGA
130 GATTTGTTTTTACGAGCATCTGAATTTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAATGGA
*
42274 AAAACGATATTGGAAGCGTGAAAAACCCTTCAATTTTTTTGGTATTGAATTATATATTTTTTCCG
195 AAAACAATATTGGAAGCGTGAAAAACCCTTCAATTTTTTTGGTATTGAATTATATATTTTTTCCG
* * * * **** * * *
42339 AGTATTGTAGCAATATTTTCATAAAAAAAAATTTTCGGATCAATTCTT-AGCAAAAAACCGTGTA
260 AGTATTGTGGCAAAAATTT--TAGAAATTTTTTTTCGGATCCATTCTTAACCGAAAAA--GTGTA
42403 C
321 C
* * *
42404 TAACCATCACTGTTATTGGTCTAAAAACGCGTTTCGGAACCCCGGTTCAATTTTGCATGATTTTT
1 TAACCATCACTGTTATTGGTCTAAAAACGCGTTTCGGAGCCCCGGCTCAGTTTTGCATGATTTTT
* *
42469 GGCAGAA-AGCCTCCTTGAAATATTTCTATTAATC-ATACCAAATCTCAGCCACAATGGATTTAA
66 GGCAGAATA-CCTCCTTGAAATATCTCTATTCATCGA-ACCAAATCTCAGCCACAATGGATTTAA
*
42532 GGATTTGCTTTTACGAGCATCTGAATTTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAATGG
129 GGATTTGTTTTTACGAGCATCTGAATTTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAATGG
* *
42597 AAAAACAATATTGGAAGCGTGAAAAAACCCTTCAATTGTTTTGGGATTGAATTATATATTTTTTT
194 AAAAACAATATTGGAAGCGTG-AAAAACCCTTCAATTTTTTTGGTATTGAATTATATA-TTTTTT
* *
42662 GCGAGTATTGTGGCAAAAATTTTAGAAATTTTTTTTCGGGTCCATTCTTAACCGAAAAAGTGTAC
257 CCGAGTATTGTGGCAAAAATTTTAGAAATTTTTTTTCGGATCCATTCTTAACCGAAAAAGTGTAC
* *
42727 TAACCATCACCGTTATTGAG-CTAAAAACGCGTTTCGGAGCCCCGGCTCAGTTTTGCGTGATTTT
1 TAACCATCACTGTTATTG-GTCTAAAAACGCGTTTCGGAGCCCCGGCTCAGTTTTGCATGATTTT
* * * * * * *
42791 TGGCAGAATCCCTCGTTGAAATGTCTCAATTCATCGAACCAATTCTCAGCCACATTGGATTTAAA
65 TGGCAGAATACCTCCTTGAAATATCTCTATTCATCGAACCAAATCTCAGCCACAATGGATTTAAG
* * * *
42856 GATTTGTTTTTACGCGCATCTGAATTATGTTTCGATTTAATTAGAAATAAATTCGGAAGAATGGA
130 GATTTGTTTTTACGAGCATCTGAATTTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAATGG-
* *
42921 AAAAACAATATTGGAAGCGTGAAAAACCCTTAAATTTTTTTTGTATTGAATTATATATTTTTTCC
194 AAAAACAATATTGGAAGCGTGAAAAACCCTTCAATTTTTTTGGTATTGAATTATATATTTTTTCC
* * * * * ** **
42986 AAGTATTGTGACAAAAATTTCAGAATTTTTTTTTCTGATCCATTCTTAGTCGAAACCGTGTAC
259 GAGTATTGTGGCAAAAATTTTAGAAATTTTTTTTCGGATCCATTCTTAACCGAAAAAGTGTAC
* * * * *
43049 TAATCATCACTGTCATTGGTCTAAAAACGCGTTTCAGAGCCTCGGCTCAGTTTTCCATGATTTTT
1 TAACCATCACTGTTATTGGTCTAAAAACGCGTTTCGGAGCCCCGGCTCAGTTTTGCATGATTTTT
* * * * * * *
43114 GCCAGAAGACCTCCTTGAAATATCTCTTTTCATCGTACCAAATCTTAGCCATAATAGATTTAAGG
66 GGCAGAATACCTCCTTGAAATATCTCTATTCATCGAACCAAATCTCAGCCACAATGGATTTAAGG
*
43179 ATTTATTTTTACGAGCATCTGAATTTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAATGGAA
131 ATTTGTTTTTACGAGCATCTGAATTTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAATGGAA
43244 AAA
196 AAA
43247 TATATTTTTT
Statistics
Matches: 734, Mismatches: 98, Indels: 25
0.86 0.11 0.03
Matches are distributed among these distances:
321 6 0.01
322 225 0.31
323 209 0.28
324 227 0.31
325 43 0.06
326 24 0.03
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (321 bp):
TAACCATCACTGTTATTGGTCTAAAAACGCGTTTCGGAGCCCCGGCTCAGTTTTGCATGATTTTT
GGCAGAATACCTCCTTGAAATATCTCTATTCATCGAACCAAATCTCAGCCACAATGGATTTAAGG
ATTTGTTTTTACGAGCATCTGAATTTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAATGGAA
AAACAATATTGGAAGCGTGAAAAACCCTTCAATTTTTTTGGTATTGAATTATATATTTTTTCCGA
GTATTGTGGCAAAAATTTTAGAAATTTTTTTTCGGATCCATTCTTAACCGAAAAAGTGTAC
Found at i:43431 original size:239 final size:240
Alignment explanation
Indices: 43010--43485 Score: 667
Period size: 239 Copynumber: 2.0 Consensus size: 240
43000 AAATTTCAGA
* * * * * **
43010 ATTTTTTTTTCTGATCCATTCTTAGTCGAAACCGTGTACTAATCATCACTGTCATTGGTCTAAAA
1 ATTTTTTTTTCGGAGCCATTCTTAGCCGAAACCGTGTACTAACCACCACCATCATTGGTCTAAAA
* *
43075 ACGCGTTTCAGAGCCTCGGCTCAGTTTTCCATGATTTTTGCCAGAAGACCTCCTTGAAATATCTC
66 ACACGTTTCAGAGCCTCAGCTCAGTTTTCCATGATTTTTGCCAGAAGACCTCCTTGAAATATCTC
* * *
43140 TTTTCATCGTACCAAATCTTAGCCATAATAGATTTAAGGATTTATTTTTACGAGCATCTGAATTT
131 TTTTCATCGTACCAAATCTCAGCCATAATAGATTTAAGGATTTATTTTTACGAGCATATGAATTA
*
43205 TGTTTCGATTTAATTAGAAATAAATTCAGAAAAATGGAAAAATAT
196 TGTTTCGATTTAATTAAAAATAAATTCAGAAAAATGGAAAAATAT
* *
43250 ATTTTTTTTT-GGAGCCTTTCTTAGCCGAAACCGTGTACTAACCACCACCATTATTGGTCTAAAA
1 ATTTTTTTTTCGGAGCCATTCTTAGCCGAAACCGTGTACTAACCACCACCATCATTGGTCTAAAA
* *
43314 ACACGTTTCGGAGCAC-CAGCTCAGTTTTCCATGATTTTTGGCAGAA-AGCCTCCTTGAAATATC
66 ACACGTTTCAGAGC-CTCAGCTCAGTTTTCCATGATTTTTGCCAGAAGA-CCTCCTTGAAATATC
* * *
43377 TCTATTT-AT-GTAACCAAATCTCGGCCA-AATTGGATTTAAGGATTTCTTTTTACGAGCATATG
129 TCT-TTTCATCGT-ACCAAATCTCAGCCATAA-TAGATTTAAGGATTTATTTTTACGAGCATATG
* *
43439 AATTATGTTTGGATTTAATTAAAAATAAATTCGGAAAAATGGAAAAA
191 AATTATGTTTCGATTTAATTAAAAATAAATTCAGAAAAATGGAAAAA
43486 CTATTTTGGA
Statistics
Matches: 209, Mismatches: 22, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
238 5 0.02
239 190 0.91
240 14 0.07
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (240 bp):
ATTTTTTTTTCGGAGCCATTCTTAGCCGAAACCGTGTACTAACCACCACCATCATTGGTCTAAAA
ACACGTTTCAGAGCCTCAGCTCAGTTTTCCATGATTTTTGCCAGAAGACCTCCTTGAAATATCTC
TTTTCATCGTACCAAATCTCAGCCATAATAGATTTAAGGATTTATTTTTACGAGCATATGAATTA
TGTTTCGATTTAATTAAAAATAAATTCAGAAAAATGGAAAAATAT
Found at i:43750 original size:560 final size:561
Alignment explanation
Indices: 42689--43806 Score: 1613
Period size: 560 Copynumber: 2.0 Consensus size: 561
42679 AATTTTAGAA
* *
42689 ATTTTTTTTCGGGTCCATTCTTAACCGAAAAAGTGTACTAACCATCACCGTTATTGAGCTAAAAA
1 ATTTTTTTTCGGGTCCATTCTTAACCGAAAAAGTGTACTAACCACCACCATTATTGAGCTAAAAA
* * * * * * * *
42754 CGCGTTTCGGAGCCCCGGCTCAGTTTTGCGTGATTTTTGGCAGAATCCCTCGTTGAAATGTCTCA
66 CACGTTTCGGAGCACCAGCTCAGTTTTCCATGATTTTTGGCAGAAACCCTCCTTGAAATATCTCA
* * * * *
42819 ATTCATCGAACCAATTCTCAGCCACATTGGATTTAAAGATTTGTTTTTACGCGCATCTGAATTAT
131 ATTCATCGAACCAAATCTCAGCCAAATTGGATTTAAAGATTTCTTTTTACGAGCATATGAATTAT
* *
42884 GTTTCGATTTAATTAGAAATAAATTCGGAAGAATGGAAAAAACAATATTGGAAGCGTGAAAAACC
196 GTTTCGATTTAATTAAAAATAAATTCGGAAAAATGGAAAAAACAATATTGGAAGCGTGAAAAACC
* *
42949 CTTAAATTTTTTTTGTATTGAATTATATATTTTTTCCAAGTATTGTGACAAAAATTTCAGAATTT
261 CTTAAATTTTTTTGGTATTGAATTATATATTTTTTCCAAGTATTGTGACAAAAATTTCAGAAATT
* * * *
43014 TTTTTTCTGATCCATTCTTAGTCGAAACCGTGTACTAATCATCACTGTCATTGGTCTAAAAACGC
326 TTTTTTCGGATCCATTCTTAGCCGAAACAGTGTACTAACCATCACTGTCATTGGTCTAAAAACGC
* *
43079 GTTTCAGAGCCTCGGCTCAGTTTTCCATGATTTTTGCCAGAAGACCTCCTTGAAATATCTCTTTT
391 GTTTCAGAGCCTCGGCTCAGTTTACCATGATTTTTGCCAGAAGACCTCCTTGAAATATCTCTATT
* * * *
43144 CATCGTACCAAATCTTAGCCATAATAGATTTAAGGATTTATTTTTACGAGCATCTGAATTTTGTT
456 CATCGTACCAAATCTCAGCCACAAAAGATTTAAGCATTTATTTTTACGAGCATCTGAATTTTGTT
*
43209 TCGATTTAATTAGAAATAAATTCAGAAAAATGGAAAAATAT
521 TCGATTTAATTAGAAATAAATACAGAAAAATGGAAAAATAT
* * * **
43250 ATTTTTTTTTGGAG-CCTTTCTTAGCCGAAACCGTGTACTAACCACCACCATTATTG-GTCTAAA
1 ATTTTTTTTCGG-GTCCATTCTTAACCGAAAAAGTGTACTAACCACCACCATTATTGAG-CTAAA
*
43313 AACACGTTTCGGAGCACCAGCTCAGTTTTCCATGATTTTTGGCAGAAAGCCTCCTTGAAATATCT
64 AACACGTTTCGGAGCACCAGCTCAGTTTTCCATGATTTTTGGCAGAAACCCTCCTTGAAATATCT
* * * *
43378 CTATTTAT-GTAACCAAATCTCGGCCAAATTGGATTTAAGGATTTCTTTTTACGAGCATATGAAT
129 CAATTCATCG-AACCAAATCTCAGCCAAATTGGATTTAAAGATTTCTTTTTACGAGCATATGAAT
* * * *
43442 TATGTTTGGATTTAATTAAAAATAAATTCGGAAAAATGG-AAAAACTATTTTGGAAGTGTGAAAA
193 TATGTTTCGATTTAATTAAAAATAAATTCGGAAAAATGGAAAAAACAATATTGGAAGCGTGAAAA
* * *
43506 ACCCTTGAATTTTTTTGGTATTGAATTATATATTTTTTTCCAAGTATTGTGGCAAAATTTTCAGA
258 ACCCTTAAATTTTTTTGGTATTGAATTATATA-TTTTTTCCAAGTATTGTGACAAAAATTTCAGA
* *
43571 AATTTTTTTT-GGGTCCATTCTTAGCCGAAACAGTGTACTAACCATCACTGTTATTAGG-CTAAA
322 AATTTTTTTTCGGATCCATTCTTAGCCGAAACAGTGTACTAACCATCACTGTCATT-GGTCTAAA
* * * * *
43634 AATGCGTTTCGGAGCAC-CGGCTCAGTTTAGCATGATTTTTGGCAGAA-AGCTCCCTTGAAATAT
386 AACGCGTTTCAGAGC-CTCGGCTCAGTTTACCATGATTTTTGCCAGAAGACCT-CCTTGAAATAT
* *
43697 CTCTATTCATTGTACCAAATCTCAGCCACAAAAGATTTAAGCATTTGTTTTTACGAGCATCTGAA
449 CTCTATTCATCGTACCAAATCTCAGCCACAAAAGATTTAAGCATTTATTTTTACGAGCATCTGAA
43762 TTTTGTTTCGATTTAATTAGAAATAAATACAGAAAAATGGAAAAA
514 TTTTGTTTCGATTTAATTAGAAATAAATACAGAAAAATGGAAAAA
43807 CGATATTGGA
Statistics
Matches: 494, Mismatches: 56, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
559 3 0.01
560 251 0.51
561 239 0.48
562 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (561 bp):
ATTTTTTTTCGGGTCCATTCTTAACCGAAAAAGTGTACTAACCACCACCATTATTGAGCTAAAAA
CACGTTTCGGAGCACCAGCTCAGTTTTCCATGATTTTTGGCAGAAACCCTCCTTGAAATATCTCA
ATTCATCGAACCAAATCTCAGCCAAATTGGATTTAAAGATTTCTTTTTACGAGCATATGAATTAT
GTTTCGATTTAATTAAAAATAAATTCGGAAAAATGGAAAAAACAATATTGGAAGCGTGAAAAACC
CTTAAATTTTTTTGGTATTGAATTATATATTTTTTCCAAGTATTGTGACAAAAATTTCAGAAATT
TTTTTTCGGATCCATTCTTAGCCGAAACAGTGTACTAACCATCACTGTCATTGGTCTAAAAACGC
GTTTCAGAGCCTCGGCTCAGTTTACCATGATTTTTGCCAGAAGACCTCCTTGAAATATCTCTATT
CATCGTACCAAATCTCAGCCACAAAAGATTTAAGCATTTATTTTTACGAGCATCTGAATTTTGTT
TCGATTTAATTAGAAATAAATACAGAAAAATGGAAAAATAT
Found at i:43840 original size:321 final size:320
Alignment explanation
Indices: 43252--44414 Score: 1586
Period size: 320 Copynumber: 3.6 Consensus size: 320
43242 AAAAATATAT
* * * ** *
43252 TTTTTTTTGGAGCCTTTCTTAGCCGAAACCGTGTACTAACCACCACCATTATTGGTCTAAAAACA
1 TTTTTTTCGGAGCCATTCTTAGCCGAAACCGTGTACTAACCATCACTGTTATTGGTCTAAAAACG
*
43317 CGTTTCGGAGCACC-AGCTCAGTTTTCCATGATTTTTGGCAGAAAGCCTCCTTGAAATATCTCTA
66 CGTTTCGGAGCACCGA-CTCAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTTGAAATATCTCTA
* * * * * *
43381 TTTAT-GTAACCAAATCTCGGCCA-AATTGGATTTAAGGATTTCTTTTTACGAGCATATGAATTA
130 TTCATCGT-ACCAAATCTCAGCCACAA-TAGATTTAAGGATTTGTTTTTACGAGCATCTGAATTT
* * * * *
43444 TGTTTGGATTTAATTAAAAATAAATTCGGAAAAATGGAAAAACTATTTTGGAAGTGTGAAAAACC
193 TGTTTCGATTTAATTAAAAATAAATTCAGAAAAATGGAAAAACAATATTGGAAGCGTGAAAAACC
* * *
43509 CTTGAATTTTTTTGGTATTGAATTATATATTTTTTTCCAAGTATTGTGGCAAAATTTTCAGAAA
258 CTTCAATTTTTTTGGTATTGAATTATATA-TTTTTTCCAAGTATTGTGGCAAAAATTCCAGAAA
* *
43573 TTTTTTTTGG-GTCCATTCTTAGCCGAAACAGTGTACTAACCATCACTGTTATTAGG-CTAAAAA
1 TTTTTTTCGGAG-CCATTCTTAGCCGAAACCGTGTACTAACCATCACTGTTATT-GGTCTAAAAA
* * *
43636 TGCGTTTCGGAGCACCGGCTCAGTTTAGCATGATTTTTGGCAGAAAG-CTCCCTTGAAATATCTC
64 CGCGTTTCGGAGCACCGACTCAGTTTTGCATGATTTTTGGCAGAAAGCCT-CCTTGAAATATCTC
* * *
43700 TATTCATTGTACCAAATCTCAGCCACAAAAGATTTAAGCATTTGTTTTTACGAGCATCTGAATTT
128 TATTCATCGTACCAAATCTCAGCCACAATAGATTTAAGGATTTGTTTTTACGAGCATCTGAATTT
* * *
43765 TGTTTCGATTTAATTAGAAATAAATACAGAAAAATGGAAAAACGATATTGGAAGCGTGAAAAACC
193 TGTTTCGATTTAATTAAAAATAAATTCAGAAAAATGGAAAAACAATATTGGAAGCGTGAAAAACC
43830 CTTCAATTTTTTTGGTATTGAATTATATATTTTTTCCGAA-TATTGTGGCAAAAATTCCAGAAA
258 CTTCAATTTTTTTGGTATTGAATTATATATTTTTTCC-AAGTATTGTGGCAAAAATTCCAGAAA
* * *
43893 TTTTTTTCGGATCCATTCATAGCCGAAACCGTGTACTAACCATCAGT-TATATTGGTCTAAAAAC
1 TTTTTTTCGGAGCCATTCTTAGCCGAAACCGTGTACTAACCATCACTGT-TATTGGTCTAAAAAC
* * * *
43957 GTGTTTCGGAGCCCCGACTCAGTTTTGCATGATCTTTGGCAGAAAGTCTCCTTGAAATATCTCTA
65 GCGTTTCGGAGCACCGACTCAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTTGAAATATCTCTA
*
44022 TTCATCGTACCAAATCTCAGCCACAATAGATTTCAGGATTTGTTTTTACGAGCATCTGAATTTTG
130 TTCATCGTACCAAATCTCAGCCACAATAGATTTAAGGATTTGTTTTTACGAGCATCTGAATTTTG
*
44087 TTTCGATTTAATTAAAAATAAATTCAGAAAAATGGAAAAAAAATATTGGAAGCGTGAAAAACCCT
195 TTTCGATTTAATTAAAAATAAATTCAGAAAAATGGAAAAACAATATTGGAAGCGTGAAAAACCCT
* * * *
44152 TCAGTTTTTTTGGTATTGAATTATATA-TTTTCCCGAGTATTGTGGAAAAAATTCCAGAAA
260 TCAATTTTTTTGGTATTGAATTATATATTTTTTCCAAGTATTGTGGCAAAAATTCCAGAAA
* * *
44212 ATTTTTTCGGAGCCATTCTTAGCCGAAACCGTGTACGT-----T-ACTGTTCTTGGTTTAAAAAC
1 TTTTTTTCGGAGCCATTCTTAGCCGAAACCGTGTAC-TAACCATCACTGTTATTGGTCTAAAAAC
*
44271 GCGTTTCGGAGTC-CCGACTCAGTTTTGCATGATTTTTGGCAGAATGCCTCCTTGAAATATCTCT
65 GCGTTTCGGAG-CACCGACTCAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTTGAAATATCTCT
* * * * * * *
44335 ATTCATCGAACCAATTCTTAGCCACATTGGATTTAAAGATTTGTTTTTACGCGCATCTGAATTAT
129 ATTCATCGTACCAAATCTCAGCCACAATAGATTTAAGGATTTGTTTTTACGAGCATCTGAATT-T
*
44400 T-TTTCAATTTAATTA
193 TGTTTCGATTTAATTA
44415 G
Statistics
Matches: 756, Mismatches: 70, Indels: 39
0.87 0.08 0.05
Matches are distributed among these distances:
314 141 0.19
315 5 0.01
318 1 0.00
319 64 0.08
320 290 0.38
321 249 0.33
322 6 0.01
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (320 bp):
TTTTTTTCGGAGCCATTCTTAGCCGAAACCGTGTACTAACCATCACTGTTATTGGTCTAAAAACG
CGTTTCGGAGCACCGACTCAGTTTTGCATGATTTTTGGCAGAAAGCCTCCTTGAAATATCTCTAT
TCATCGTACCAAATCTCAGCCACAATAGATTTAAGGATTTGTTTTTACGAGCATCTGAATTTTGT
TTCGATTTAATTAAAAATAAATTCAGAAAAATGGAAAAACAATATTGGAAGCGTGAAAAACCCTT
CAATTTTTTTGGTATTGAATTATATATTTTTTCCAAGTATTGTGGCAAAAATTCCAGAAA
Done.