Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009838.1 Corchorus capsularis cultivar CVL-1 contig09859, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69842

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
764--1273
48
11.0
48
68
14
300
33
13
10
41
1.80
764--1346
92
6.3
92
86
3
735
33
13
11
42
1.80
892--1224
44
7.3
44
63
16
122
32
14
12
41
1.82
1412--1444
2
16.5
2
93
0
57
48
0
0
51
1.00
8617--8662
24
1.9
24
95
0
83
56
10
19
13
1.66
15291--15317
4
6.8
4
100
0
54
22
0
0
77
0.76
22539--22685
36
3.9
36
75
11
141
21
17
23
38
1.93
22537--22697
79
2.0
79
97
0
304
19
18
23
38
1.93
22570--22697
43
3.1
43
72
16
153
17
19
25
37
1.93
41955--42010
27
2.1
27
82
0
67
21
14
46
17
1.84
46056--46095
18
2.2
18
86
0
53
25
15
45
15
1.84
55514--55547
17
1.9
17
88
5
50
55
20
5
17
1.62
56469--56503
16
2.2
16
89
0
52
48
14
20
17
1.81
56911--56980
3
23.3
3
82
5
79
1
35
0
62
1.04
59438--59485
25
1.9
25
82
0
60
29
12
14
43
1.82
59478--59503
4
6.5
4
100
0
52
23
0
0
76
0.78
59605--59977
102
3.7
102
99
0
730
39
10
13
36
1.78
65375--65409
16
2.2
16
89
0
52
48
14
20
17
1.81
65817--65871
3
18.3
3
80
0
56
0
38
1
60
1.08
69246--69273
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!