Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000984.1 Corchorus capsularis cultivar CVL-1 contig00984, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4798
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25


Found at i:1555 original size:11 final size:11

Alignment explanation


    Indices: 1541--1578  Score: 51
    Period size: 11  Copynumber: 3.5  Consensus size: 11

       1531 ATTCATAACA

                       
       1541 AATTTATAATT
          1 AATTTATAATT

                       
       1552 AATTTATAATT
          1 AATTTATAATT

                        
       1563 -ATTTGATAATT
          1 AATTT-ATAATT

            *    
       1574 TATTT
          1 AATTT

       1579 TATATAGGAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 3
        0.89            0.00        0.11

Matches are distributed among these distances:
  10    4  0.16
  11   17  0.68
  12    4  0.16

ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58


Consensus pattern (11 bp):   
AATTTATAATT

Found at i:4404 original size:28 final size:27

Alignment explanation


    Indices: 4344--4404  Score: 68
    Period size: 28  Copynumber: 2.2  Consensus size: 27

       4334 AGCAACCCAA

                  *              *  *  
       4344 AAAATTGCAAAATTGCCGCAAGTACCC
          1 AAAATTCCAAAATTGCCGCAACTAACC

                           *            
       4371 AAAATTCCAAAATTTTCCGCAACTAACC
          1 AAAATTCCAAAA-TTGCCGCAACTAACC

             *    
       4399 AGAATT
          1 AAAATT

       4405 GCAAGAGCCC


Statistics
Matches: 28,  Mismatches: 5, Indels: 1
        0.82            0.15        0.03

Matches are distributed among these distances:
  27   11  0.39
  28   17  0.61

ACGTcount: A:0.43, C:0.25, G:0.10, T:0.23


Consensus pattern (27 bp):   
AAAATTCCAAAATTGCCGCAACTAACC
Done.