Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009845.1 Corchorus capsularis cultivar CVL-1 contig09866, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116492

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1712--1736
11
2.3
11
100
0
50
92
0
8
0
0.40
3001--3232
72
3.2
71
82
5
243
34
19
19
25
1.96
22704--22733
2
15.0
2
100
0
60
50
0
0
50
1.00
23160--23197
18
2.1
18
100
0
76
52
10
10
26
1.68
23547--23600
27
2.0
28
92
3
92
55
7
29
7
1.55
27077--27112
15
2.4
15
90
9
56
27
2
0
69
1.02
28784--28822
17
2.2
19
86
9
55
43
2
0
53
1.14
61901--62065
83
2.0
83
96
0
303
41
13
15
29
1.85
89600--89643
19
2.3
19
88
0
61
11
52
2
34
1.50
90495--90554
21
2.9
21
87
0
75
36
10
11
41
1.75
92714--92747
10
3.4
10
83
0
50
52
0
0
47
1.00
98695--98751
29
2.0
29
100
0
114
7
17
19
56
1.64
99347--99398
27
1.9
27
92
0
86
34
28
23
13
1.92
99364--99427
33
1.9
34
90
3
103
32
32
21
12
1.91
110139--110175
12
2.9
13
84
15
51
59
0
2
37
1.12
111034--111086
3
18.0
3
96
3
99
33
0
0
66
0.92
114199--114251
25
2.1
25
100
0
106
22
3
39
33
1.72
114629--114928
150
2.0
150
92
0
501
30
27
13
29
1.94
115279--116492
333
3.7
332
91
2
1922
35
17
14
31
1.90

Tables:   1

The End!