Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009849.1 Corchorus capsularis cultivar CVL-1 contig09870, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4828
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.35


Found at i:1138 original size:15 final size:15

Alignment explanation


    Indices: 1118--1146  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

       1108 CAATATAACA

                           
       1118 ATGGTAATATGATTT
          1 ATGGTAATATGATTT

                          
       1133 ATGGTAATATGATT
          1 ATGGTAATATGATT

       1147 CTTGGATGCA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45


Consensus pattern (15 bp):   
ATGGTAATATGATTT

Found at i:3193 original size:24 final size:25

Alignment explanation


    Indices: 3149--3200  Score: 79
    Period size: 24  Copynumber: 2.1  Consensus size: 25

       3139 AGATCTGTCA

                          *          
       3149 GGTACAGAAACCCATAATTGATTTT
          1 GGTACAGAAACCCAGAATTGATTTT

                            *        
       3174 GGTACAG-AACCCAGATTTGATTTT
          1 GGTACAGAAACCCAGAATTGATTTT

               
       3198 GGT
          1 GGT

       3201 GTTGGAAAGA


Statistics
Matches: 25,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  24   18  0.72
  25    7  0.28

ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33


Consensus pattern (25 bp):   
GGTACAGAAACCCAGAATTGATTTT
Done.