Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000985.1 Corchorus capsularis cultivar CVL-1 contig00985, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 921

Length: 1536
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31


Found at i:940 original size:16 final size:16

Alignment explanation


    Indices: 921--991  Score: 83
    Period size: 16  Copynumber: 4.5  Consensus size: 16

        911 TTTTGGGTGT

                    *       
        921 CCGAACCCGAAATGAC
          1 CCGAACCCAAAATGAC

                 *           
        937 CCGAATCCAAACA--AC
          1 CCGAACCCAAA-ATGAC

                            
        952 CCGAACCCAAAATGAC
          1 CCGAACCCAAAATGAC

              *            *
        968 CCAAACCCAAAATGAT
          1 CCGAACCCAAAATGAC

                    
        984 CCGAACCC
          1 CCGAACCC

        992 GATCAACCTG


Statistics
Matches: 46,  Mismatches: 6, Indels: 6
        0.79            0.10        0.10

Matches are distributed among these distances:
  14    1  0.02
  15   12  0.26
  16   32  0.70
  17    1  0.02

ACGTcount: A:0.42, C:0.39, G:0.11, T:0.07


Consensus pattern (16 bp):   
CCGAACCCAAAATGAC
Done.