Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009850.1 Corchorus capsularis cultivar CVL-1 contig09871, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53496

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1100--1282
32
5.7
32
80
4
154
27
22
18
31
1.97
13105--13134
1
30.0
1
100
0
60
100
0
0
0
0.00
15633--15687
17
3.2
18
66
7
51
40
1
12
45
1.53
17621--17646
11
2.4
11
100
0
52
0
11
0
88
0.52
19751--19784
2
17.0
2
100
0
68
50
0
0
50
1.00
35492--35597
36
2.9
36
95
0
185
41
17
30
10
1.83
37704--37747
3
14.7
3
100
0
88
34
0
0
65
0.93
39195--39292
31
3.2
30
77
8
99
37
23
10
28
1.87
46081--46110
2
15.0
2
100
0
60
50
0
0
50
1.00
50410--50498
46
1.9
46
95
0
160
28
23
20
28
1.99
51353--51382
2
15.0
2
100
0
60
50
0
0
50
1.00
51509--51550
21
2.0
21
86
4
59
54
0
14
30
1.40
51526--51674
70
2.1
69
90
4
228
48
0
14
36
1.48
51575--51990
215
1.9
215
95
0
744
44
3
15
37
1.62

Tables:   1

The End!