genome.fa.s9853.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009853.1 Corchorus capsularis cultivar CVL-1 contig09874, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63662

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2850--2879	15	2.0	15	100	0	60	0	53	13	33	1.40
5662--5718	30	1.9	30	100	0	114	33	17	10	38	1.84
10099--10128	15	2.0	15	93	0	51	56	6	13	23	1.60
19629--19707	27	2.8	27	86	7	95	25	24	12	37	1.90
20394--20474	29	2.7	30	82	3	101	38	12	23	25	1.90
20499--20630	60	2.2	59	84	9	160	31	9	19	39	1.84
20519--20643	60	2.1	60	80	8	139	30	12	20	37	1.88
21114--21174	27	2.2	27	94	2	104	6	31	6	55	1.51
23545--23600	28	2.1	26	87	12	78	60	8	7	23	1.51
26315--27713	319	4.4	317	81	8	1524	34	16	15	33	1.90
26315--27680	631	2.2	630	82	7	1608	34	16	15	33	1.90
28206--29226	326	3.2	311	80	7	909	36	17	13	32	1.88
28237--29281	315	3.3	310	79	8	995	36	17	13	33	1.88
43010--43044	14	2.5	14	80	0	52	77	8	2	11	1.10
43868--43894	4	6.8	4	100	0	54	77	0	0	22	0.76
45132--45169	5	7.8	5	83	16	53	42	0	0	57	0.98
45132--45164	13	2.8	12	90	9	50	42	0	0	57	0.98
46049--46265	96	2.2	96	90	4	335	18	25	14	41	1.88
46193--46345	78	1.9	78	93	4	261	16	26	12	45	1.82
47081--47106	2	13.0	2	100	0	52	50	0	0	50	1.00
48287--48314	14	2.0	14	100	0	56	57	28	0	14	1.38
49580--49881	99	3.1	99	88	2	423	17	25	13	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51230--51260	2	15.5	2	100	0	62	51	0	0	48	1.00
51654--51741	42	2.1	42	95	0	158	7	31	15	44	1.76
57917--57983	20	3.3	19	73	22	64	11	31	5	50	1.63
58208--58240	16	2.1	16	100	0	66	30	21	18	30	1.97
60883--61832	332	2.9	332	91	0	1497	30	15	18	35	1.92
61215--63662	984	2.5	981	93	1	4180	31	17	18	32	1.94

Tables:   1

The End!