Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009854.1 Corchorus capsularis cultivar CVL-1 contig09875, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86926

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--2424
975
2.5
963
90
5
3693
33
17
17
30
1.94
6552--6582
16
1.9
16
93
0
53
19
41
19
19
1.90
11397--11521
60
2.0
62
87
4
182
14
28
11
46
1.78
11479--11638
54
2.9
54
89
2
230
11
28
7
51
1.65
12499--12540
17
2.4
18
80
4
50
50
7
4
38
1.51
14925--14968
23
1.9
23
85
0
61
50
2
11
36
1.51
18231--18340
22
5.0
22
82
5
125
31
10
18
39
1.85
18233--18394
22
7.3
22
77
8
114
32
9
18
39
1.84
18494--18559
22
3.0
22
78
6
55
37
6
18
37
1.75
18599--18834
22
10.7
22
70
14
105
41
9
12
36
1.75
18644--18835
22
8.8
22
70
11
110
42
8
11
36
1.73
18954--19034
22
3.7
22
77
6
92
39
9
12
38
1.76
18916--19051
44
3.2
42
76
14
129
41
9
14
33
1.79
19371--19415
21
2.1
21
87
0
63
51
8
15
24
1.72
38857--38933
29
2.6
30
75
23
81
28
20
6
44
1.76
42889--43129
81
3.0
80
88
2
365
22
16
27
33
1.96
50188--50264
40
1.9
40
100
0
154
36
20
25
16
1.94
67786--67823
2
19.0
2
100
0
76
50
0
0
50
1.00
69957--70005
17
2.9
17
93
0
80
36
22
22
18
1.95
69949--70011
17
3.7
17
80
16
76
38
20
22
19
1.94
85228--85410
33
5.8
33
73
15
154
22
4
55
16
1.61
85282--85401
57
2.1
57
93
0
204
24
5
53
17
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85312--85368
24
2.4
24
90
0
87
22
5
52
19
1.66
85361--85427
18
3.9
17
72
14
50
23
5
61
8
1.48

Tables:   1

The End!