Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009857.1 Corchorus capsularis cultivar CVL-1 contig09878, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56648

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1617--1646
2
15.0
2
92
0
51
50
0
3
46
1.18
5802--5863
31
2.0
31
96
0
115
40
12
24
22
1.89
8321--8442
60
2.0
61
93
3
210
21
18
19
40
1.92
20523--20816
33
8.9
33
76
3
250
31
20
36
11
1.88
20518--20784
99
2.7
98
81
8
294
32
19
37
11
1.87
20569--20811
132
1.8
132
85
1
344
32
19
35
12
1.89
23356--23389
16
2.1
16
100
0
68
23
26
17
32
1.97
24078--24465
33
11.8
33
82
0
481
32
20
34
11
1.89
30858--30911
27
2.0
27
100
0
108
51
3
14
29
1.60
30855--30903
14
3.6
14
72
5
55
53
4
14
28
1.59
31216--31253
11
3.5
11
89
10
51
39
0
2
57
1.12
34013--34104
32
2.9
32
88
0
139
32
26
27
14
1.94
34529--34564
4
9.0
4
87
0
54
69
0
0
30
0.89
36199--36236
20
2.0
19
90
10
60
47
7
7
36
1.62
37620--37657
2
19.0
2
100
0
76
50
0
0
50
1.00
38304--38371
33
2.1
33
91
0
109
25
22
13
39
1.90
38307--38382
33
2.3
33
88
0
107
26
23
10
39
1.87
38700--38815
60
1.9
60
89
3
160
50
18
20
10
1.75
38963--39022
31
1.9
31
96
0
111
40
3
28
28
1.72
40425--40482
30
1.9
30
86
6
82
29
8
22
39
1.84
42786--42814
2
14.5
2
100
0
58
51
0
0
48
1.00

Tables:   1

The End!