Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01009859.1 Corchorus capsularis cultivar CVL-1 contig09880, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 84518
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2 characters in sequence are not A, C, G, or T
Found at i:7 original size:2 final size:2
Alignment explanation
Indices: 1--42 Score: 75
Period size: 2 Copynumber: 20.5 Consensus size: 2
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AGT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT A
43 CTATTGGAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 37 0.95
3 2 0.05
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:852 original size:5 final size:5
Alignment explanation
Indices: 821--845 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
811 TGGATCTAGG
821 GAAAA GAAAA GAAAA GAAAA GAAAA
1 GAAAA GAAAA GAAAA GAAAA GAAAA
846 AAGAAAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
GAAAA
Found at i:1073 original size:3 final size:3
Alignment explanation
Indices: 1065--1100 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
1055 ATTTTCCAAC
*
1065 TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1101 CTTACATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:1108 original size:12 final size:12
Alignment explanation
Indices: 1065--1109 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
1055 ATTTTCCAAC
*
1065 TTATTATTATTA
1 TTATCATTATTA
*
1077 TTATTATTATTA
1 TTATCATTATTA
1089 TTATCATTATTA
1 TTATCATTATTA
1101 CTTA-CATTA
1 -TTATCATTA
1110 ATAAATGAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
12 28 0.90
13 3 0.10
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (12 bp):
TTATCATTATTA
Found at i:9312 original size:233 final size:233
Alignment explanation
Indices: 8905--9606 Score: 1395
Period size: 233 Copynumber: 3.0 Consensus size: 233
8895 AAAAGCCAAC
8905 GTAATATTTCTGACGTAAATATCCTAGCTACGTACTTCTTATAAGGAATGGTAAACTTACGAGGT
1 GTAATATTTCTGACGTAAATATCCTAGCTACGTACTTCTTATAAGGAATGGTAAACTTACGAGGT
8970 TCATGGAACTAATTTACAACTTCATTTTGGTTTAGTTATGGTGATGTCATGACCCAAACTCGAGA
66 TCATGGAACTAATTTACAACTTCATTTTGGTTTAGTTATGGTGATGTCATGACCCAAACTCGAGA
9035 ATAAGAGAGTTTCGAATGATCTGTAAGGGAAGAAATCAATAGAGGAGGGACCCATTGGTGATCAA
131 ATAAGAGAGTTTCGAATGATCTGTAAGGGAAGAAATCAATAGAGGAGGGACCCATTGGTGATCAA
9100 AGGAGACTCTTTCTGATAGTTAAGTCAATAAGATCTCA
196 AGGAGACTCTTTCTGATAGTTAAGTCAATAAGATCTCA
9138 GTAATATTTCTGACGTAAATATCCTAGCTACGTACTTCTTATAAGGAATGGTAAACTTACGAGGT
1 GTAATATTTCTGACGTAAATATCCTAGCTACGTACTTCTTATAAGGAATGGTAAACTTACGAGGT
9203 TCATGGAACTAATTTACAACTTCATTTTGGTTTAGTTATGGTGATGTCATGACCCAAACTCGAGA
66 TCATGGAACTAATTTACAACTTCATTTTGGTTTAGTTATGGTGATGTCATGACCCAAACTCGAGA
9268 ATAAGAGAGTTTCGAATGATCTGTAAGGGAAGAAATCAATAGAGGAGGGACCCATTGGTGATCAA
131 ATAAGAGAGTTTCGAATGATCTGTAAGGGAAGAAATCAATAGAGGAGGGACCCATTGGTGATCAA
9333 AGGAGACTCTTTCTGATAGTTAAGTCAATAAGATCTCA
196 AGGAGACTCTTTCTGATAGTTAAGTCAATAAGATCTCA
9371 GTAATATTTCTGACGTAAATATCCTAGCTACGTACTTCTTATAAGGAATGGTAAACTTACGAGGT
1 GTAATATTTCTGACGTAAATATCCTAGCTACGTACTTCTTATAAGGAATGGTAAACTTACGAGGT
9436 TCATGGAACTAATTTACAACTTCATTTTGGTTTAGTTATGGTGATGTCATGACCCAAACTCGAGA
66 TCATGGAACTAATTTACAACTTCATTTTGGTTTAGTTATGGTGATGTCATGACCCAAACTCGAGA
9501 ATAAGAGAGTTTCGAATGATCTGTAAGGGAAGAAATCAATAGAGGAGGGACCCATTGGTGATCAA
131 ATAAGAGAGTTTCGAATGATCTGTAAGGGAAGAAATCAATAGAGGAGGGACCCATTGGTGATCAA
*
9566 AGGAGACTCTCTCTGATAGTTAAGTCAATAAGATCTCA
196 AGGAGACTCTTTCTGATAGTTAAGTCAATAAGATCTCA
9604 GTA
1 GTA
9607 TGTGTAGTAA
Statistics
Matches: 468, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
233 468 1.00
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (233 bp):
GTAATATTTCTGACGTAAATATCCTAGCTACGTACTTCTTATAAGGAATGGTAAACTTACGAGGT
TCATGGAACTAATTTACAACTTCATTTTGGTTTAGTTATGGTGATGTCATGACCCAAACTCGAGA
ATAAGAGAGTTTCGAATGATCTGTAAGGGAAGAAATCAATAGAGGAGGGACCCATTGGTGATCAA
AGGAGACTCTTTCTGATAGTTAAGTCAATAAGATCTCA
Found at i:11579 original size:2 final size:2
Alignment explanation
Indices: 11572--11608 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
11562 TTAATCTTAN
11572 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11609 TGAAAAAGAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:29554 original size:25 final size:26
Alignment explanation
Indices: 29526--29575 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
29516 ATGTTCTTAT
29526 TAAGAAACCATGTCATATTT-ATATA
1 TAAGAAACCATGTCATATTTGATATA
*
29551 TAAGAAATCATGTCATATTTGATAT
1 TAAGAAACCATGTCATATTTGATAT
29576 TTAAATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (26 bp):
TAAGAAACCATGTCATATTTGATATA
Found at i:30409 original size:12 final size:12
Alignment explanation
Indices: 30297--30421 Score: 74
Period size: 12 Copynumber: 9.9 Consensus size: 12
30287 CCACCACCTG
30297 CACCAGCTCCAC
1 CACCAGCTCCAC
* ** *
30309 CGCCAAATCCTC
1 CACCAGCTCCAC
*
30321 CACCAGCGCCAC
1 CACCAGCTCCAC
*
30333 CGCCAGCTCCAC
1 CACCAGCTCCAC
30345 CACCAAG-TCCAC
1 CACC-AGCTCCAC
* * *
30357 CTCCACCACCAC
1 CACCAGCTCCAC
30369 CACCGAAACCGCCTCCAC
1 CACC---A--G-CTCCAC
30387 CACCAGCTCCAC
1 CACCAGCTCCAC
30399 CACCTAG-TCCAC
1 CACC-AGCTCCAC
*
30411 CTCCAGCTCCA
1 CACCAGCTCCA
30422 GCTCCTCCTC
Statistics
Matches: 84, Mismatches: 19, Indels: 20
0.68 0.15 0.16
Matches are distributed among these distances:
11 3 0.04
12 65 0.77
13 5 0.06
15 2 0.02
18 9 0.11
ACGTcount: A:0.25, C:0.56, G:0.10, T:0.10
Consensus pattern (12 bp):
CACCAGCTCCAC
Found at i:30433 original size:24 final size:24
Alignment explanation
Indices: 30380--30433 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
30370 ACCGAAACCG
30380 CCTCCACCACCAGCTCCACCACCT
1 CCTCCACCACCAGCTCCACCACCT
** * * *
30404 AGTCCACCTCCAGCTCCAGCTCCT
1 CCTCCACCACCAGCTCCACCACCT
30428 CCTCCA
1 CCTCCA
30434 AACCCAGCAC
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.19, C:0.57, G:0.07, T:0.17
Consensus pattern (24 bp):
CCTCCACCACCAGCTCCACCACCT
Found at i:30458 original size:18 final size:18
Alignment explanation
Indices: 30418--30486 Score: 66
Period size: 18 Copynumber: 3.8 Consensus size: 18
30408 CACCTCCAGC
* *
30418 TCCAGCTCCTCCTCCAAA
1 TCCAGCACCTCCTCCGAA
* *
30436 CCCAGCACCACCTCCGAA
1 TCCAGCACCTCCTCCGAA
* * *
30454 TCCAGAACCTCCACCGAG
1 TCCAGCACCTCCTCCGAA
*
30472 TCCACCACCTCCTCC
1 TCCAGCACCTCCTCC
30487 TCCACCGAAC
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 39 1.00
ACGTcount: A:0.23, C:0.54, G:0.09, T:0.14
Consensus pattern (18 bp):
TCCAGCACCTCCTCCGAA
Found at i:30488 original size:24 final size:24
Alignment explanation
Indices: 30461--30534 Score: 85
Period size: 24 Copynumber: 3.1 Consensus size: 24
30451 GAATCCAGAA
30461 CCTCCACCGAGTCCACCACCTCCT
1 CCTCCACCGAGTCCACCACCTCCT
** * * *
30485 CCTCCACCGAACCCTCCACCACCA
1 CCTCCACCGAGTCCACCACCTCCT
* *
30509 CCTCCACCAAGTCCACCGCCTCCT
1 CCTCCACCGAGTCCACCACCTCCT
30533 CC
1 CC
30535 AAGCCCACCG
Statistics
Matches: 38, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.19, C:0.61, G:0.07, T:0.14
Consensus pattern (24 bp):
CCTCCACCGAGTCCACCACCTCCT
Found at i:30492 original size:15 final size:15
Alignment explanation
Indices: 30472--30513 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
30462 CTCCACCGAG
30472 TCCACCACCTCCTCC
1 TCCACCACCTCCTCC
*
30487 TCCACCGAAC-CCTCC
1 TCCACC-ACCTCCTCC
*
30502 ACCACCACCTCC
1 TCCACCACCTCC
30514 ACCAAGTCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
14 2 0.09
15 18 0.82
16 2 0.09
ACGTcount: A:0.19, C:0.64, G:0.02, T:0.14
Consensus pattern (15 bp):
TCCACCACCTCCTCC
Found at i:30544 original size:18 final size:18
Alignment explanation
Indices: 30503--30546 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
30493 GAACCCTCCA
* *
30503 CCACCACCTCCACCAAGT
1 CCACCGCCTCCACCAAGC
*
30521 CCACCGCCTCCTCCAAGC
1 CCACCGCCTCCACCAAGC
30539 CCACCGCC
1 CCACCGCC
30547 AGCACCAGCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.20, C:0.61, G:0.09, T:0.09
Consensus pattern (18 bp):
CCACCGCCTCCACCAAGC
Found at i:30614 original size:18 final size:18
Alignment explanation
Indices: 30587--30630 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
30577 ACCACCTGCA
* * *
30587 CCACCACCTAAGCCTCCT
1 CCACCTCCTAAACCGCCT
30605 CCACCTCCTAAACCGCCT
1 CCACCTCCTAAACCGCCT
30623 CCACCTCC
1 CCACCTCC
30631 ACCCCCAAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.20, C:0.59, G:0.05, T:0.16
Consensus pattern (18 bp):
CCACCTCCTAAACCGCCT
Found at i:30671 original size:24 final size:24
Alignment explanation
Indices: 30605--30673 Score: 68
Period size: 24 Copynumber: 2.9 Consensus size: 24
30595 TAAGCCTCCT
* * *
30605 CCACCTCCTAAACCGCCTCCACCT
1 CCACCTCCTAAACCACCACCACCA
* *
30629 CCACC-CCCAAACCCTCCACCACCA
1 CCACCTCCTAAA-CCACCACCACCA
*
30653 CCACCTCCTAAGCCACCACCA
1 CCACCTCCTAAACCACCACCA
30674 AATCTCGGAC
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
23 5 0.14
24 27 0.75
25 4 0.11
ACGTcount: A:0.26, C:0.61, G:0.03, T:0.10
Consensus pattern (24 bp):
CCACCTCCTAAACCACCACCACCA
Found at i:45688 original size:31 final size:31
Alignment explanation
Indices: 45598--45713 Score: 146
Period size: 31 Copynumber: 3.8 Consensus size: 31
45588 TGGCACATGT
* * *
45598 CCTTTT-GTGCACGTGGCATGCCACGTGTCA
1 CCTTTTGGTACACGTGACGTGCCACGTGTCA
*
45628 -CTTTTGGTACACGTGACGTGACACGTGTCA
1 CCTTTTGGTACACGTGACGTGCCACGTGTCA
* * * *
45658 CCTTTTGGAACACATGGCGTGCCACATGTCA
1 CCTTTTGGTACACGTGACGTGCCACGTGTCA
45689 CCTTTTGGTACACGTGACGTGCCAC
1 CCTTTTGGTACACGTGACGTGCCAC
45714 CTTTTGGTAC
Statistics
Matches: 72, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
29 5 0.07
30 20 0.28
31 47 0.65
ACGTcount: A:0.18, C:0.28, G:0.25, T:0.28
Consensus pattern (31 bp):
CCTTTTGGTACACGTGACGTGCCACGTGTCA
Found at i:45714 original size:24 final size:24
Alignment explanation
Indices: 45687--45737 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
45677 TGCCACATGT
45687 CACCTTTTGGTACACGTGACGTGC
1 CACCTTTTGGTACACGTGACGTGC
**
45711 CACCTTTTGGTACACGTGGTGTGC
1 CACCTTTTGGTACACGTGACGTGC
45735 CAC
1 CAC
45738 GTGTCATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.16, C:0.29, G:0.25, T:0.29
Consensus pattern (24 bp):
CACCTTTTGGTACACGTGACGTGC
Found at i:55888 original size:2 final size:2
Alignment explanation
Indices: 55881--55914 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
55871 ACTTTCACCC
55881 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
55915 GCTCATTAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:58641 original size:26 final size:26
Alignment explanation
Indices: 58605--58657 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
58595 ACCCGTGTTG
* *
58605 CGCATCTGGTTATGGTGGGTGAGTCT
1 CGCACCTGGTTATAGTGGGTGAGTCT
58631 CGCACCTGGTTATAGTGGGTGAGTCT
1 CGCACCTGGTTATAGTGGGTGAGTCT
58657 C
1 C
58658 CCAACAGGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.19, G:0.36, T:0.32
Consensus pattern (26 bp):
CGCACCTGGTTATAGTGGGTGAGTCT
Found at i:71155 original size:14 final size:14
Alignment explanation
Indices: 71136--71175 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
71126 AACGTTTATA
71136 TCGTTTTATTAATG
1 TCGTTTTATTAATG
71150 TCG-TTT-TT-ATG
1 TCGTTTTATTAATG
71161 TCGTTTTATTAATG
1 TCGTTTTATTAATG
71175 T
1 T
71176 AAGTTATTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
11 6 0.26
12 5 0.22
13 5 0.22
14 7 0.30
ACGTcount: A:0.17, C:0.07, G:0.15, T:0.60
Consensus pattern (14 bp):
TCGTTTTATTAATG
Found at i:82707 original size:647 final size:645
Alignment explanation
Indices: 81444--84514 Score: 4244
Period size: 647 Copynumber: 4.7 Consensus size: 645
81434 GAGTATTGTA
* * *
81444 GCCAAAAATTGATGCAAAATTGAGTCGGGGCCCCAGAACGCGTTTTTAGCTAAAAACCGTGAGTG
1 GCCAAAAA-TCATGCAAAATTGAGTCGGGGCCCCAAAACGCGTTTTTAGCTAAAAACTGTGAGTG
* *
81509 TTAGTACACGATTTCAGCTAAAAATTGACCCGAAATTTTTTTTTTTCNCAATTTTTTTGCCACAA
65 TTAGTACACGATTTCAGCTAAAAACTGACCCGAAA--TTTTTTTTTCTCAA-TTTTTTGCCACAA
* * * * * * *
81574 TGCTCATAAAATATATAT-ATGTCAACGCCAAAAAGATTAAAGGGTTTTTCACACTTCTAATATC
127 TACTCATAAAAAATATATAAT-TCAACGCCAGAAAGATTGAAGGATTTTTCACGCTTCTAATAAC
* *
81638 GTTTTTCATTTTTTTTTCCGAATTAATTTCAAATTAAATCGAAACAAGATTCAGATGCTCGTAAA
191 GTTTTTCA-ATTTTTTT-CGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAA
* *
81703 AAGAAATCCTTAAGCCCATTGTCACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCA
254 AAGAAATCCTTAAGCCCATTGTGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCC
* * * *
81768 TTCTG-GAAAAATCATGCAAAATTAAGTCGGGGCCCCGAAACGCGTTTTTAGCAAAAAAACCGTG
319 TTCTGCCAAAAATCATGCAAAATTGAGTCGGGGCCCCGAAACGCGTTTTTAGC-TAAAAACTGTG
* * * *
81832 AGTGTTAGTACACGATTTCAACTTAAAACTGACACGAATTTTTTTTTTATCAATTTTTTGCCACA
383 AGTGTTAGTACACGATTTCAGCTAAAAACTGACACGAAATTTTTTTTTCTCAATTTTTTGCCACA
* *
81897 ATGCTCATT-AAAAATATATAATTCAACGCCAAAAAGATTGAAGG--TTTTCACGCTTCTAATAT
448 ATACTC-TTAAAAAATATATAATTCAACGCCAGAAAGATTGAAGGATTTTTCACGCTTCTAATAT
* * * *
81959 CGTTTCTCAATTTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTTGTAAG
512 CGTTTTTCAATTTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAA
** * * *
82024 AAGAAATCCCCAAGTCCA--ATGAGGCTGAGGTTTGGTTCGATAAATATAGATATTTCAAGGAGT
577 AAGAAATCCTTAAGCCCATTATGA--CTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGT
82087 CCATCT
640 CCATCT
* *
82093 GCCAAAAATCATGCAAAATTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTTAAAACTGTGAGTGT
1 GCCAAAAATCATGCAAAATTGAGTCGGGGCCCCAAAACGCGTTTTTAGCTAAAAACTGTGAGTGT
* * *
82158 TAGTACATGATATCAGCTAAAAACTGACCCGAAATTTTTTTTTTTGTCAATTTTTTGCCACAATA
66 TAGTACACGATTTCAGCTAAAAACTGACCCGAAA--TTTTTTTTTCTCAATTTTTTGCCACAATA
82223 CTCATAAAAAATATATAATTCAACGCCAGAAAGATTGAAGGATTTTTCACGCTTCTAATAACGTT
129 CTCATAAAAAATATATAATTCAACGCCAGAAAGATTGAAGGATTTTTCACGCTTCTAATAACGTT
* *
82288 TTTCAATTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGTTTCAGATGCTCAT-AAAAGAA
194 TTTCAATTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAG-A
* * * * * * ** * * * *
82352 AATGCTTAAGTCTAATGTGGCTAAGATTTTATTCGATAAATATAGATATTTTAAGGTGTCCTTCA
258 AATCCTTAAGCCCATTGTGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCCTTCT
* *
82417 GCCAAAAATTATGCAAAATTGAGTCGGGGCCCCGAAACACGTTTTTAGCTAAAAACTGTGAGTGT
323 GCCAAAAATCATGCAAAATTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTAAAAACTGTGAGTGT
* * * * *
82482 TAGTATACAATTTCAACGAAAAACTGACACGAAATTTTTTTTTCTCAATTTGTTGCCACAATACT
388 TAGTACACGATTTCAGCTAAAAACTGACACGAAATTTTTTTTTCTCAATTTTTTGCCACAATACT
* * *
82547 CTTAAAAAATATATAATTCAGCGCCAGAAAGATTGAAGGATTTTTCACGCTTCTGATATTGTTTT
453 CTTAAAAAATATATAATTCAACGCCAGAAAGATTGAAGGATTTTTCACGCTTCTAATATCGTTTT
*
82612 TCAATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAGAAA
518 TCAATTTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAGAAA
*
82677 TCCTTAAGCCCATTATGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCCTTCT
583 TCCTTAAGCCCATTATGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCCATCT
* * *
82740 GCCAAAAATCATACAAAATTGAGTCGGGGACCCAAAACGCGTTTTTAACTAAAAACTGTGAGTGT
1 GCCAAAAATCATGCAAAATTGAGTCGGGGCCCCAAAACGCGTTTTTAGCTAAAAACTGTGAGTGT
*
82805 TAGTACACGATTTCAGCTAAAAACTGACCCGAAATTTTTTTTTCTCAATTTGTTGCCACAATACT
66 TAGTACACGATTTCAGCTAAAAACTGACCCGAAATTTTTTTTTCTCAATTTTTTGCCACAATACT
82870 CATAAAAAATATATAATTCAACGCCAGAAAGATTGAAGGATTTTTCACGCTTCTAATAACGTTTT
131 CATAAAAAATATATAATTCAACGCCAGAAAGATTGAAGGATTTTTCACGCTTCTAATAACGTTTT
82935 TCAATTTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAGAAA
196 TCAA-TTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAGAAA
* * * *
83000 TCCTTAAGCCCATTTTTACTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCCATCTGC
260 TCCTTAAGCCCATTGTGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCCTTCTGC
* **
83065 CAAAAATCATCCAAAATTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTAAAAACTGTGA---AAA
325 CAAAAATCATGCAAAATTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTAAAAACTGTGAGTGTTA
* * * * *
83127 GTACACGATTTCAGCTAAAAACTGACCCGAAAATTTGTTTTCTCAATTTGTTGCCACAATACTCA
390 GTACACGATTTCAGCTAAAAACTGACACGAAATTTTTTTTTCTCAATTTTTTGCCACAATACTCT
* * *
83192 TAAAAAATTTATAATTCAACGCTAGAAAGATTGAAGGATTTTTCACGCTTCTAATAACGTTTTTT
455 TAAAAAATATATAATTCAACGCCAGAAAGATTGAAGGATTTTTCACGCTTCTAATATCG--TTTT
*
83257 TCAAATTTTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGTTGCTCGTAAAAAGA
518 TC-AA-TTTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAGA
* * * *
83322 AATCCTTAAGCCCATTTTTACCGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCCATCT
581 AATCCTTAAGCCCATTATGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCCATCT
* * * *
83387 GCCAAAAATCATGCAAAATTGAGCCGGGACCCCAAAACGCGTTTTTAACTTAAAACTGTGAGTGT
1 GCCAAAAATCATGCAAAATTGAGTCGGGGCCCCAAAACGCGTTTTTAGCTAAAAACTGTGAGTGT
* * *
83452 TAGTACACGATTTCAGCTAAAAACTGACCCGAAAATTTGTCTTCTCAATTTTTTGCCACAATACT
66 TAGTACACGATTTCAGCTAAAAACTGACCCGAAATTTTTTTTTCTCAATTTTTTGCCACAATACT
* * *
83517 CATAAAAAATATCTAATACAACGCCAGAAAGATTAAAGGATTTTTCACGCTTCTAATAACGTTTT
131 CATAAAAAATATATAATTCAACGCCAGAAAGATTGAAGGATTTTTCACGCTTCTAATAACGTTTT
* *
83582 GCAATTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGTTTCAGATGCTCGT-AAAAGAAAA
196 TCAATTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAG-AAA
* * * * * * *
83646 TCCTTAAGTCTAATGTGGCTGAGATTTGGTTCGATGAATATAGATGTTTCAAGGATTCCATCTGC
260 TCCTTAAGCCCATTGTGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCCTTCTGC
* ** * *
83711 CAAAAATCATGCAAAATTGAATCATGGCCCCGAAACGCATTTTTAGCTAAAAACTATGAGTGTTA
325 CAAAAATCATGCAAAATTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTAAAAACTGTGAGTGTTA
* * * *
83776 GTACACGATTTCAGCTAAAAACTGAC-CGAAAATTTGTTTTCTCAATTTTTTGCCACAATAATCA
390 GTACACGATTTCAGCTAAAAACTGACACGAAATTTTTTTTTCTCAATTTTTTGCCACAATACTCT
* * *
83840 TAAAAAATATATAATTCAACGCCTGAAAGATTAAAGGATTTTTCACGCTTCTAATAACGTTTTTC
455 TAAAAAATATATAATTCAACGCCAGAAAGATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTC
* * * * *
83905 AA-TTTTTTTCGAATAAATTCCTAATTAAATCGAAACAAGTTTCAGATGTTCGT-AAATGAAAAT
520 AATTTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAG-AAAT
* * * * * * * **
83968 CCTTAAGTCTAATGTGGCTGAGATTTGGTTCGATGAATATATATATTTCAAGGAGTCCGTAA
584 CCTTAAGCCCATTATGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCCATCT
* * * * * *
84030 GCCAAAAATCATGCAAAATTGAGTCAGGGCACCGAAACACGTTTTTTGCTAAAAACCGTGAGTGT
1 GCCAAAAATCATGCAAAATTGAGTCGGGGCCCCAAAACGCGTTTTTAGCTAAAAACTGTGAGTGT
* *
84095 TAGTATACGATTTCAGCTAAAAACTGACACGAAA-TTTTTTTTCTCAATTTTTTGCCACAATACT
66 TAGTACACGATTTCAGCTAAAAACTGACCCGAAATTTTTTTTTCTCAATTTTTTGCCACAATACT
* * * * ** * **
84159 TATAAAAAATATATAATTGAATGCCAGAAAAATTGAAGGGGTTTTCAGGCTTCTAATTTCGTTTT
131 CATAAAAAATATATAATTCAACGCCAGAAAGATTGAAGGATTTTTCACGCTTCTAATAACGTTTT
84224 TCAATTGTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAGAA
196 TCAATT-TTTTT-CGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAGAA
* * * *
84289 ATCCTTAAGACCATTGTGACCGAGATTTGGTTCGATCAGTATATAGATATTTCAAGAAGTCCTTC
259 ATCCTTAAGCCCATTGTGACTGAGATTTGGTTCGAT--GAATATAGATATTTCAAGGAGTCCTTC
* *
84354 TGCCAAAAATCATACAAAATTGAGTCGGGGCCCCGAAACGCGTTTTTAACTAAAAAC--T-A-TG
322 TGCCAAAAATCATGCAAAATTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTAAAAACTGTGAGTG
*
84415 --ACGTACACGATTTCAGCTAAAAACTGACACGTAAAATTTTTTTTTCTCAATTTTTTTGTCACA
387 TTA-GTACACGATTTCAGCTAAAAACTGACACG--AAATTTTTTTTTCTCAA-TTTTTTGCCACA
* * *
84478 ATACTAATAAAAAAAATATATAGTTCAACGCCA-AAAG
448 ATACT-CT-TAAAAAATATATAATTCAACGCCAGAAAG
84515 GATT
Statistics
Matches: 2168, Mismatches: 223, Indels: 65
0.88 0.09 0.03
Matches are distributed among these distances:
640 1 0.00
641 26 0.01
642 94 0.04
643 304 0.14
644 99 0.05
645 330 0.15
646 456 0.21
647 629 0.29
648 190 0.09
649 39 0.02
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (645 bp):
GCCAAAAATCATGCAAAATTGAGTCGGGGCCCCAAAACGCGTTTTTAGCTAAAAACTGTGAGTGT
TAGTACACGATTTCAGCTAAAAACTGACCCGAAATTTTTTTTTCTCAATTTTTTGCCACAATACT
CATAAAAAATATATAATTCAACGCCAGAAAGATTGAAGGATTTTTCACGCTTCTAATAACGTTTT
TCAATTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAGAAAT
CCTTAAGCCCATTGTGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCCTTCTGCC
AAAAATCATGCAAAATTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTAAAAACTGTGAGTGTTAG
TACACGATTTCAGCTAAAAACTGACACGAAATTTTTTTTTCTCAATTTTTTGCCACAATACTCTT
AAAAAATATATAATTCAACGCCAGAAAGATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCA
ATTTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAGAAATCC
TTAAGCCCATTATGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCCATCT
Found at i:82785 original size:323 final size:322
Alignment explanation
Indices: 81444--84514 Score: 4222
Period size: 323 Copynumber: 9.5 Consensus size: 322
81434 GAGTATTGTA
* *
81444 GCCAAAAATTGATGCAAAATTGAGTCGGGGCCCC-AGAACGCGTTTTTAGCTAAAAACCGTGAGT
1 GCCAAAAA-TCATGCAAAATTGAGTCGGGGCCCCGA-AACGCGTTTTTAGCTAAAAACTGTGAGT
* *
81508 GTTAGTACACGATTTCAGCTAAAAATTGACCCGAAATTTTTTTTTTTCNCAATTTTTTTGCCACA
64 GTTAGTACACGATTTCAGCTAAAAACTGACCCGAAA--TTTTTTTTTCTCAA-TTTTTTGCCACA
* * * * * *
81573 ATGCTCATAAAATATATAT-ATGTCAACGCCAAAAAGATTAAAGGGTTTTTCACACTTCTAATAT
126 ATACTCATAAAAAATATATAAT-TCAACGCCAGAAAGATTGAAGGATTTTTCACGCTTCTAATAT
* *
81637 CGTTTTTCATTTTTTTTTCCGAATTAATTTCAAATTAAATCGAAACAAGATTCAGATGCTCGTAA
190 CGTTTTTCA-ATTTTTTT-CGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAA
*
81702 AAAGAAATCCTTAAGCCCATTGTCACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGT-
253 AAAGAAATCCTTAAGCCCATTGTGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTC
81766 CATTCT
318 CA-TCT
* * * *
81772 G-GAAAAATCATGCAAAATTAAGTCGGGGCCCCGAAACGCGTTTTTAGCAAAAAAACCGTGAGTG
1 GCCAAAAATCATGCAAAATTGAGTCGGGGCCCCGAAACGCGTTTTTAGC-TAAAAACTGTGAGTG
* * * * * *
81836 TTAGTACACGATTTCAACTTAAAACTGACACGAATTTTTTTTTTATCAATTTTTTGCCACAATGC
65 TTAGTACACGATTTCAGCTAAAAACTGACCCGAAATTTTTTTTTCTCAATTTTTTGCCACAATAC
* *
81901 TCATTAAAAATATATAATTCAACGCCAAAAAGATTGAAGG--TTTTCACGCTTCTAATATCGTTT
130 TCATAAAAAATATATAATTCAACGCCAGAAAGATTGAAGGATTTTTCACGCTTCTAATATCGTTT
* * * *
81964 CTCAATTTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCTTGTAAGAAGAA
195 TTCAA-TTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAGAA
** * * * * * *
82029 ATCCCCAAGTCCAATGAGGCTGAGGTTTGGTTCGATAAATATAGATATTTCAAGGAGTCCATCT
259 ATCCTTAAGCCCATTGTGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCCATCT
*
82093 GCCAAAAATCATGCAAAATTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTTAAAACTGTGAGTGT
1 GCCAAAAATCATGCAAAATTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTAAAAACTGTGAGTGT
* * *
82158 TAGTACATGATATCAGCTAAAAACTGACCCGAAATTTTTTTTTTTGTCAATTTTTTGCCACAATA
66 TAGTACACGATTTCAGCTAAAAACTGACCCGAAA--TTTTTTTTTCTCAATTTTTTGCCACAATA
*
82223 CTCATAAAAAATATATAATTCAACGCCAGAAAGATTGAAGGATTTTTCACGCTTCTAATAACGTT
129 CTCATAAAAAATATATAATTCAACGCCAGAAAGATTGAAGGATTTTTCACGCTTCTAATATCGTT
* *
82288 TTTCAATTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGTTTCAGATGCTCAT-AAAAGAA
194 TTTCAATTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAG-A
* * * * * * ** * * * * *
82352 AATGCTTAAGTCTAATGTGGCTAAGATTTTATTCGATAAATATAGATATTTTAAGGTGTCCTTCA
258 AATCCTTAAGCCCATTGTGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCCATCT
* *
82417 GCCAAAAATTATGCAAAATTGAGTCGGGGCCCCGAAACACGTTTTTAGCTAAAAACTGTGAGTGT
1 GCCAAAAATCATGCAAAATTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTAAAAACTGTGAGTGT
* * * * * *
82482 TAGTATACAATTTCAACGAAAAACTGACACGAAATTTTTTTTTCTCAATTTGTTGCCACAATACT
66 TAGTACACGATTTCAGCTAAAAACTGACCCGAAATTTTTTTTTCTCAATTTTTTGCCACAATACT
* * * *
82547 CTTAAAAAATATATAATTCAGCGCCAGAAAGATTGAAGGATTTTTCACGCTTCTGATATTGTTTT
131 CATAAAAAATATATAATTCAACGCCAGAAAGATTGAAGGATTTTTCACGCTTCTAATATCGTTTT
82612 TCAATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAGAAA
196 TCAATTTTTTT-CGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAGAAA
* *
82677 TCCTTAAGCCCATTATGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCCTTCT
260 TCCTTAAGCCCATTGTGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCCATCT
* * * *
82740 GCCAAAAATCATACAAAATTGAGTCGGGGACCCAAAACGCGTTTTTAACTAAAAACTGTGAGTGT
1 GCCAAAAATCATGCAAAATTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTAAAAACTGTGAGTGT
*
82805 TAGTACACGATTTCAGCTAAAAACTGACCCGAAATTTTTTTTTCTCAATTTGTTGCCACAATACT
66 TAGTACACGATTTCAGCTAAAAACTGACCCGAAATTTTTTTTTCTCAATTTTTTGCCACAATACT
*
82870 CATAAAAAATATATAATTCAACGCCAGAAAGATTGAAGGATTTTTCACGCTTCTAATAACGTTTT
131 CATAAAAAATATATAATTCAACGCCAGAAAGATTGAAGGATTTTTCACGCTTCTAATATCGTTTT
82935 TCAATTTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAGAAA
196 TCAA-TTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAGAAA
* * *
83000 TCCTTAAGCCCATTTTTACTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCCATCT
260 TCCTTAAGCCCATTGTGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCCATCT
* *
83063 GCCAAAAATCATCCAAAATTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTAAAAACTGTGA---A
1 GCCAAAAATCATGCAAAATTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTAAAAACTGTGAGTGT
* * * *
83125 AAGTACACGATTTCAGCTAAAAACTGACCCGAAAATTTGTTTTCTCAATTTGTTGCCACAATACT
66 TAGTACACGATTTCAGCTAAAAACTGACCCGAAATTTTTTTTTCTCAATTTTTTGCCACAATACT
* * *
83190 CATAAAAAATTTATAATTCAACGCTAGAAAGATTGAAGGATTTTTCACGCTTCTAATAACGTTTT
131 CATAAAAAATATATAATTCAACGCCAGAAAGATTGAAGGATTTTTCACGCTTCTAATATCG--TT
*
83255 TTTCAAATTTTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGTTGCTCGTAAAAA
194 TTTC-AA--TTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAA
* * * *
83320 GAAATCCTTAAGCCCATTTTTACCGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCCAT
256 GAAATCCTTAAGCCCATTGTGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCCAT
83385 CT
321 CT
* * * * *
83387 GCCAAAAATCATGCAAAATTGAGCCGGGACCCCAAAACGCGTTTTTAACTTAAAACTGTGAGTGT
1 GCCAAAAATCATGCAAAATTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTAAAAACTGTGAGTGT
* * *
83452 TAGTACACGATTTCAGCTAAAAACTGACCCGAAAATTTGTCTTCTCAATTTTTTGCCACAATACT
66 TAGTACACGATTTCAGCTAAAAACTGACCCGAAATTTTTTTTTCTCAATTTTTTGCCACAATACT
* * * *
83517 CATAAAAAATATCTAATACAACGCCAGAAAGATTAAAGGATTTTTCACGCTTCTAATAACGTTTT
131 CATAAAAAATATATAATTCAACGCCAGAAAGATTGAAGGATTTTTCACGCTTCTAATATCGTTTT
* *
83582 GCAATTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGTTTCAGATGCTCGT-AAAAGAAAA
196 TCAATTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAG-AAA
* * * * * *
83646 TCCTTAAGTCTAATGTGGCTGAGATTTGGTTCGATGAATATAGATGTTTCAAGGATTCCATCT
260 TCCTTAAGCCCATTGTGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCCATCT
* ** * *
83709 GCCAAAAATCATGCAAAATTGAATCATGGCCCCGAAACGCATTTTTAGCTAAAAACTATGAGTGT
1 GCCAAAAATCATGCAAAATTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTAAAAACTGTGAGTGT
* * *
83774 TAGTACACGATTTCAGCTAAAAACTGA-CCGAAAATTTGTTTTCTCAATTTTTTGCCACAATAAT
66 TAGTACACGATTTCAGCTAAAAACTGACCCGAAATTTTTTTTTCTCAATTTTTTGCCACAATACT
* * *
83838 CATAAAAAATATATAATTCAACGCCTGAAAGATTAAAGGATTTTTCACGCTTCTAATAACGTTTT
131 CATAAAAAATATATAATTCAACGCCAGAAAGATTGAAGGATTTTTCACGCTTCTAATATCGTTTT
* * * * *
83903 TCAATTTTTTTCGAATAAATTCCTAATTAAATCGAAACAAGTTTCAGATGTTCGT-AAATGAAAA
196 TCAATTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAG-AAA
* * * * * * **
83967 TCCTTAAGTCTAATGTGGCTGAGATTTGGTTCGATGAATATATATATTTCAAGGAGTCCGTAA
260 TCCTTAAGCCCATTGTGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCCATCT
* * * * *
84030 GCCAAAAATCATGCAAAATTGAGTCAGGGCACCGAAACACGTTTTTTGCTAAAAACCGTGAGTGT
1 GCCAAAAATCATGCAAAATTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTAAAAACTGTGAGTGT
* *
84095 TAGTATACGATTTCAGCTAAAAACTGACACGAAA-TTTTTTTTCTCAATTTTTTGCCACAATACT
66 TAGTACACGATTTCAGCTAAAAACTGACCCGAAATTTTTTTTTCTCAATTTTTTGCCACAATACT
* * * * ** * *
84159 TATAAAAAATATATAATTGAATGCCAGAAAAATTGAAGGGGTTTTCAGGCTTCTAATTTCGTTTT
131 CATAAAAAATATATAATTCAACGCCAGAAAGATTGAAGGATTTTTCACGCTTCTAATATCGTTTT
84224 TCAATTGTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAGAA
196 TCAATT-TTTTT-CGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAGAA
* * * * *
84289 ATCCTTAAGACCATTGTGACCGAGATTTGGTTCGATCAGTATATAGATATTTCAAGAAGTCCTTC
259 ATCCTTAAGCCCATTGTGACTGAGATTTGGTTCGAT--GAATATAGATATTTCAAGGAGTCCATC
84354 T
322 T
* *
84355 GCCAAAAATCATACAAAATTGAGTCGGGGCCCCGAAACGCGTTTTTAACTAAAAAC--T-A-TG-
1 GCCAAAAATCATGCAAAATTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTAAAAACTGTGAGTGT
* *
84415 -ACGTACACGATTTCAGCTAAAAACTGACACGTAAAATTTTTTTTTCTCAATTTTTTTGTCACAA
66 TA-GTACACGATTTCAGCTAAAAACTGACCCG--AAATTTTTTTTTCTCAA-TTTTTTGCCACAA
* *
84479 TACTAATAAAAAAAATATATAGTTCAACGCCA-AAAG
127 TACTCAT--AAAAAATATATAATTCAACGCCAGAAAG
84515 GATT
Statistics
Matches: 2473, Mismatches: 235, Indels: 73
0.89 0.08 0.03
Matches are distributed among these distances:
319 1 0.00
320 149 0.06
321 533 0.22
322 386 0.16
323 606 0.25
324 452 0.18
325 120 0.05
326 57 0.02
327 168 0.07
328 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (322 bp):
GCCAAAAATCATGCAAAATTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTAAAAACTGTGAGTGT
TAGTACACGATTTCAGCTAAAAACTGACCCGAAATTTTTTTTTCTCAATTTTTTGCCACAATACT
CATAAAAAATATATAATTCAACGCCAGAAAGATTGAAGGATTTTTCACGCTTCTAATATCGTTTT
TCAATTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAGAAAT
CCTTAAGCCCATTGTGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCCATCT
Done.