genome.fa.s9861.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009861.1 Corchorus capsularis cultivar CVL-1 contig09882, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84913

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5601--5644	21	2.1	21	91	0	70	22	31	11	34	1.90
5777--5898	32	3.7	34	89	6	180	14	33	36	15	1.88
5803--5854	16	3.2	16	70	20	54	17	36	32	13	1.89
8120--8221	36	2.9	34	92	5	177	26	9	16	47	1.78
11906--11932	1	27.0	1	100	0	54	100	0	0	0	0.00
12013--12058	23	2.0	23	100	0	92	56	0	21	21	1.42
36747--36787	3	13.3	3	94	5	73	65	0	34	0	0.93
50906--50945	20	2.0	20	95	0	71	47	10	5	37	1.59
53737--53766	15	2.0	15	100	0	60	20	0	13	66	1.24
54111--54175	31	2.1	31	88	0	94	41	20	15	23	1.89
55642--55685	21	2.1	21	87	4	63	59	15	6	18	1.58
57119--57225	54	2.0	54	94	0	187	23	13	30	32	1.92
57300--57441	69	2.1	69	93	0	239	27	14	32	25	1.95
57537--57594	27	2.1	27	90	0	89	22	13	32	31	1.93
57677--57738	21	3.0	21	90	0	97	40	4	32	22	1.75
58072--58202	45	3.0	45	94	3	232	24	10	30	34	1.89
58256--58285	15	2.0	15	100	0	60	33	20	26	20	1.97
60120--60144	12	2.1	12	100	0	50	24	24	16	36	1.94
60147--60184	18	2.1	18	100	0	76	34	10	42	13	1.78
61525--61577	26	2.0	26	100	0	106	30	13	18	37	1.89
61579--61632	26	2.1	26	100	0	108	40	25	7	25	1.82
72450--72510	30	2.0	30	93	0	104	52	21	4	21	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72487--72534	21	2.2	21	81	3	60	54	14	10	20	1.70
72566--72628	29	2.2	29	88	0	90	17	22	17	42	1.89
72778--72853	29	2.6	28	81	6	98	42	17	21	19	1.90
75895--75929	2	18.5	2	88	11	56	51	0	0	48	1.00
76483--76627	78	1.9	78	100	0	290	24	26	26	22	2.00
81037--81062	7	3.7	7	100	0	52	30	15	11	42	1.82
82010--82055	19	2.3	20	85	11	67	45	0	0	54	0.99
82106--82172	15	4.1	16	69	20	50	44	2	0	52	1.16
82110--82183	18	4.1	19	70	20	61	44	2	0	52	1.15
82149--82181	15	2.3	15	89	5	50	48	0	0	51	1.00
82794--84913	332	6.4	331	87	4	2889	35	12	14	37	1.84

Tables:   1

The End!