genome.fa.s9865.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009865.1 Corchorus capsularis cultivar CVL-1 contig09886, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57772

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33--171	22	6.3	22	75	11	113	32	9	20	38	1.84
262--327	22	3.0	22	77	2	62	37	4	19	37	1.73
270--577	22	13.9	22	66	13	67	39	9	16	34	1.81
367--518	22	6.9	21	71	20	98	40	10	13	35	1.80
411--603	44	4.4	44	73	10	164	43	9	12	34	1.75
414--579	66	2.5	66	78	8	178	42	10	12	34	1.77
685--733	19	2.5	20	90	6	73	46	10	18	24	1.79
724--1281	22	25.7	22	68	16	157	38	9	15	36	1.80
724--998	44	6.3	43	75	11	195	41	9	14	35	1.78
891--1020	23	5.7	23	80	8	124	38	9	16	36	1.80
893--999	45	2.4	46	85	3	146	39	9	15	35	1.80
1083--1127	23	2.0	23	90	0	72	31	17	13	37	1.89
10312--10410	49	2.0	49	98	0	189	43	7	23	26	1.79
11922--12050	32	4.0	32	80	7	136	17	38	31	12	1.86
13192--13257	34	1.9	34	84	0	87	36	21	15	27	1.93
14151--14231	29	2.7	31	71	17	80	29	13	18	38	1.89
14278--14472	63	3.1	63	80	5	207	31	13	17	36	1.89
14429--14471	22	2.0	22	95	4	79	32	13	18	34	1.90
16863--16993	35	3.6	36	73	18	119	35	16	8	39	1.79
16934--17050	57	2.1	57	90	3	182	33	15	9	41	1.79
16996--17273	35	7.9	35	81	8	296	38	17	7	36	1.78
17067--17227	56	3.0	55	86	7	240	39	16	6	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17216--17326	53	2.1	53	94	0	195	38	18	7	36	1.78
17039--17379	18	19.3	18	70	15	167	38	17	7	36	1.78
16940--17401	88	5.2	88	84	5	554	36	17	8	37	1.80
17269--17361	35	2.7	35	96	0	168	38	18	7	35	1.79
18171--18460	51	5.7	50	81	5	305	37	14	6	42	1.70
21667--21746	38	2.1	38	100	0	160	22	13	25	38	1.91
22927--23013	27	3.1	29	85	6	126	41	28	12	17	1.86
23912--23957	23	2.0	24	86	4	67	73	0	21	4	1.00
23917--23965	23	2.1	24	81	11	57	77	0	16	6	0.96
26208--26246	12	3.6	12	80	19	50	25	25	15	33	1.95
26357--26392	10	3.6	10	92	0	63	41	22	5	30	1.76
26357--26395	20	2.0	20	100	0	78	43	20	5	30	1.73
27396--27438	12	3.5	12	84	6	59	23	20	18	37	1.94
31477--31512	15	2.3	16	90	4	56	63	0	5	30	1.17
31935--32832	475	1.9	464	83	6	1173	31	13	13	41	1.83
36838--36878	21	1.9	22	85	5	57	39	14	34	12	1.84
41502--41731	114	2.0	114	100	0	460	42	17	16	23	1.89
43258--43310	26	2.0	26	92	0	88	35	16	13	33	1.88
46258--46290	16	2.1	16	94	0	57	42	21	27	9	1.83
49173--49313	39	3.6	39	83	0	158	31	14	21	31	1.94
51065--51184	62	2.0	58	88	6	177	39	25	9	26	1.85

Tables:   1

The End!