Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01009872.1 Corchorus capsularis cultivar CVL-1 contig09893, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7909
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Found at i:1033 original size:8 final size:8
Alignment explanation
Indices: 1016--1196 Score: 97
Period size: 8 Copynumber: 24.5 Consensus size: 8
1006 TGAAATAAAC
*
1016 TGAATAAT
1 TGAAGAAT
*
1024 TGAAGGAT
1 TGAAGAAT
1032 TGAAGAAT
1 TGAAGAAT
*
1040 TGAATAAT
1 TGAAGAAT
*
1048 TGAAAAAT
1 TGAAGAAT
* *
1056 TTAAGCAT
1 TGAAGAAT
*
1064 TGAATAAT
1 TGAAGAAT
*
1072 TGAAGTAT
1 TGAAGAAT
1080 TG-A-AAT
1 TGAAGAAT
1086 TGAAGAAT
1 TGAAGAAT
*
1094 TG-A-ATT
1 TGAAGAAT
1100 TGAAGAAT
1 TGAAGAAT
1108 TG-A-AAT
1 TGAAGAAT
1114 TG-A-AAT
1 TGAAGAAT
**
1120 TG-AGTCT
1 TGAAGAAT
1127 TGAAGAAT
1 TGAAGAAT
1135 TG-A-AAT
1 TGAAGAAT
*
1141 TGAA-ACAC
1 TGAAGA-AT
*
1149 TGTAGAAT
1 TGAAGAAT
*
1157 TG-A-ATT
1 TGAAGAAT
1163 TGAAGAAT
1 TGAAGAAT
1171 TG-A-AAT
1 TGAAGAAT
*
1177 TGAAGCAT
1 TGAAGAAT
*
1185 TGTAGAAT
1 TGAAGAAT
1193 TGAA
1 TGAA
1197 ATTGAAAGAT
Statistics
Matches: 131, Mismatches: 29, Indels: 26
0.70 0.16 0.14
Matches are distributed among these distances:
6 34 0.26
7 15 0.11
8 81 0.62
9 1 0.01
ACGTcount: A:0.45, C:0.03, G:0.20, T:0.32
Consensus pattern (8 bp):
TGAAGAAT
Found at i:1044 original size:24 final size:23
Alignment explanation
Indices: 1016--1210 Score: 121
Period size: 22 Copynumber: 8.8 Consensus size: 23
1006 TGAAATAAAC
1016 TGAATAATTGAAGGATTGAAGAAT
1 TGAATAATTGAA-GATTGAAGAAT
* * *
1040 TGAATAATTGAAAAATTTAAGCAT
1 TGAATAATTG-AAGATTGAAGAAT
1064 TGAATAATTGAAGTATTG-A-AAT
1 TGAATAATTGAAG-ATTGAAGAAT
* *
1086 TGAAGAATTGAA-TTTGAAGAAT
1 TGAATAATTGAAGATTGAAGAAT
**
1108 TG-A-AATTGAA-ATTG-AGTCT
1 TGAATAATTGAAGATTGAAGAAT
* *
1127 TGAAGAATTGAA-ATTGAA-ACAC
1 TGAATAATTGAAGATTGAAGA-AT
* * *
1149 TGTAGAATTGAA-TTTGAAGAAT
1 TGAATAATTGAAGATTGAAGAAT
*
1171 TG-A-AATTGAAGCATTGTAGAAT
1 TGAATAATTGAAG-ATTGAAGAAT
1193 TG-A-AATTGAAAGATTGAA
1 TGAATAATTG-AAGATTGAA
1211 ACTGAAGAAT
Statistics
Matches: 139, Mismatches: 20, Indels: 26
0.75 0.11 0.14
Matches are distributed among these distances:
19 5 0.04
20 21 0.15
21 14 0.10
22 59 0.42
23 7 0.05
24 31 0.22
25 2 0.01
ACGTcount: A:0.45, C:0.03, G:0.21, T:0.32
Consensus pattern (23 bp):
TGAATAATTGAAGATTGAAGAAT
Found at i:1088 original size:14 final size:14
Alignment explanation
Indices: 1021--1220 Score: 101
Period size: 14 Copynumber: 13.8 Consensus size: 14
1011 TAAACTGAAT
*
1021 AATTGAAGGATTGAA
1 AATTGAAGAATTG-A
*
1036 GAATTGAATAATTGAAA
1 -AATTGAAGAATTG--A
* *
1053 AATTTAAGCATTGAA
1 AATTGAAGAATTG-A
*
1068 TAATTGAAGTATTGA
1 -AATTGAAGAATTGA
1083 AATTGAAGAATTGA
1 AATTGAAGAATTGA
*
1097 ATTTGAAGAATTGA
1 AATTGAAGAATTGA
1111 AATTG-A-AATTGA
1 AATTGAAGAATTGA
**
1123 GTCTTGAAGAATTGA
1 -AATTGAAGAATTGA
*
1138 AATTGAA-ACACTGTA
1 AATTGAAGA-ATTG-A
*
1153 GAATTG-A-ATTTGAA
1 -AATTGAAGAATTG-A
1167 GAATTG-A-AATTGA
1 -AATTGAAGAATTGA
*
1180 AGCATTGTAGAATTGA
1 A--ATTGAAGAATTGA
1196 AATTGAA-AGATTGA
1 AATTGAAGA-ATTGA
*
1210 AACTGAAGAAT
1 AATTGAAGAAT
1221 GACCTGAAGT
Statistics
Matches: 149, Mismatches: 21, Indels: 30
0.75 0.10 0.15
Matches are distributed among these distances:
12 7 0.05
13 7 0.05
14 75 0.50
15 14 0.09
16 44 0.30
17 2 0.01
ACGTcount: A:0.46, C:0.03, G:0.20, T:0.31
Consensus pattern (14 bp):
AATTGAAGAATTGA
Found at i:1089 original size:6 final size:6
Alignment explanation
Indices: 1078--1203 Score: 54
Period size: 6 Copynumber: 18.2 Consensus size: 6
1068 TAATTGAAGT
* * *
1078 ATTGAA ATTGAAGA ATTGAA TTTGAAGA ATTGAA ATTGAA ATTGAGT CTTGAAGA
1 ATTGAA ATTG-A-A ATTGAA ATTG-A-A ATTGAA ATTGAA ATTGA-A ATTG-A-A
* *
1133 ATTGAA ATTGAAA CACTGTAGA ATTGAA TTTGAAGA ATTGAA ATTGAA
1 ATTGAA ATTG-AA -ATTG-A-A ATTGAA ATTG-A-A ATTGAA ATTGAA
1181 GCATTGTAGA ATTGAA ATTGAA A
1 --ATTG-A-A ATTGAA ATTGAA A
1204 GATTGAAACT
Statistics
Matches: 94, Mismatches: 11, Indels: 30
0.70 0.08 0.22
Matches are distributed among these distances:
6 44 0.47
7 14 0.15
8 33 0.35
9 2 0.02
10 1 0.01
ACGTcount: A:0.44, C:0.03, G:0.21, T:0.32
Consensus pattern (6 bp):
ATTGAA
Found at i:1110 original size:36 final size:35
Alignment explanation
Indices: 1063--1216 Score: 139
Period size: 36 Copynumber: 4.5 Consensus size: 35
1053 AATTTAAGCA
* *
1063 TTGAATAATTGAAGTATTGAA-ATTGAAGAATTGAAT
1 TTGAAGAATTGAA--ATTGAACATTGTAGAATTGAAT
*
1099 TTGAAGAATTGAAATTGAA-ATTG-AG---T---C
1 TTGAAGAATTGAAATTGAACATTGTAGAATTGAAT
*
1126 TTGAAGAATTGAAATTGAAACACTGTAGAATTGAAT
1 TTGAAGAATTGAAATTG-AACATTGTAGAATTGAAT
*
1162 TTGAAGAATTGAAATTGAAGCATTGTAGAATTGAAA
1 TTGAAGAATTGAAATTGAA-CATTGTAGAATTGAAT
*
1198 TTGAA-AGATTGAAACTGAA
1 TTGAAGA-ATTGAAATTGAA
1217 GAATGACCTG
Statistics
Matches: 100, Mismatches: 7, Indels: 22
0.78 0.05 0.17
Matches are distributed among these distances:
27 17 0.17
28 2 0.02
29 3 0.03
30 3 0.03
33 3 0.03
34 10 0.10
35 3 0.03
36 59 0.59
ACGTcount: A:0.44, C:0.03, G:0.21, T:0.32
Consensus pattern (35 bp):
TTGAAGAATTGAAATTGAACATTGTAGAATTGAAT
Found at i:1137 original size:27 final size:26
Alignment explanation
Indices: 1062--1145 Score: 105
Period size: 27 Copynumber: 3.0 Consensus size: 26
1052 AAATTTAAGC
*
1062 ATTGAATAATTGAAGTATTGAAATTGAAGA
1 ATTGAAT--TTGAAGAATTGAAATTG-A-A
1092 ATTGAATTTGAAGAATTGAAATTGAA
1 ATTGAATTTGAAGAATTGAAATTGAA
*
1118 ATTGAGTCTTGAAGAATTGAAATTGAA
1 ATTGAAT-TTGAAGAATTGAAATTGAA
1145 A
1 A
1146 CACTGTAGAA
Statistics
Matches: 51, Mismatches: 2, Indels: 5
0.88 0.03 0.09
Matches are distributed among these distances:
26 7 0.14
27 21 0.41
28 16 0.31
30 7 0.14
ACGTcount: A:0.45, C:0.01, G:0.20, T:0.33
Consensus pattern (26 bp):
ATTGAATTTGAAGAATTGAAATTGAA
Found at i:1334 original size:8 final size:8
Alignment explanation
Indices: 1300--1502 Score: 56
Period size: 8 Copynumber: 27.5 Consensus size: 8
1290 AATTGGAGCC
1300 TTGAAGAA
1 TTGAAGAA
1308 -TGAA-AA
1 TTGAAGAA
** *
1314 TCCAAGCA
1 TTGAAGAA
1322 TTGAAGAA
1 TTGAAGAA
*
1330 TTG-A-AT
1 TTGAAGAA
*
1336 TTGAAGAT
1 TTGAAGAA
1344 TTG-A-AA
1 TTGAAGAA
1350 TTG-A-AA
1 TTGAAGAA
**
1356 TTGAAGCG
1 TTGAAGAA
1364 TTGAAGAA
1 TTGAAGAA
*
1372 -TGGA-AA
1 TTGAAGAA
1378 TTGAA-ACA
1 TTGAAGA-A
*
1386 TTGAAGCA
1 TTGAAGAA
1394 TTGAAGAA
1 TTGAAGAA
1402 TTG-A-AA
1 TTGAAGAA
1408 TTG-AGAA
1 TTGAAGAA
1415 TTG-A-AA
1 TTGAAGAA
1421 TTGAA-ACA
1 TTGAAGA-A
1429 TTGAAG--
1 TTGAAGAA
1435 TTGAAAGAAATA
1 TTG-AAG--A-A
1447 TTGAAGAA
1 TTGAAGAA
*
1455 TTG--CAA
1 TTGAAGAA
*
1461 TTGAAGCA
1 TTGAAGAA
*
1469 TTGAAGAT
1 TTGAAGAA
1477 TTG--GAA
1 TTGAAGAA
* *
1483 TTGAGGCA
1 TTGAAGAA
*
1491 TTGAATAA
1 TTGAAGAA
1499 TTGA
1 TTGA
1503 GGAACGGAAG
Statistics
Matches: 146, Mismatches: 26, Indels: 46
0.67 0.12 0.21
Matches are distributed among these distances:
6 42 0.29
7 29 0.20
8 68 0.47
9 1 0.01
11 3 0.02
12 3 0.02
ACGTcount: A:0.44, C:0.05, G:0.23, T:0.29
Consensus pattern (8 bp):
TTGAAGAA
Found at i:1341 original size:14 final size:14
Alignment explanation
Indices: 1321--1473 Score: 115
Period size: 14 Copynumber: 11.0 Consensus size: 14
1311 AAATCCAAGC
1321 ATTGAAGAATTGAA
1 ATTGAAGAATTGAA
* *
1335 TTTGAAGATTTGAA
1 ATTGAAGAATTGAA
1349 ATTG-A-AATTGAA
1 ATTGAAGAATTGAA
* *
1361 GCGTTGAAGAATGGAA
1 --ATTGAAGAATTGAA
1377 ATTGAA-ACATTGAA
1 ATTGAAGA-ATTGAA
1391 GCATTGAAGAATTGAA
1 --ATTGAAGAATTGAA
1407 ATTG-AGAATTGAA
1 ATTGAAGAATTGAA
1420 ATTGAA-ACATTGAA
1 ATTGAAGA-ATTGAA
* *
1434 GTTGAAAGAA---AT
1 ATTG-AAGAATTGAA
*
1446 ATTGAAGAATTGCA
1 ATTGAAGAATTGAA
*
1460 ATTGAAGCATTGAA
1 ATTGAAGAATTGAA
1474 GATTTGGAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 30
0.71 0.10 0.19
Matches are distributed among these distances:
11 5 0.05
12 10 0.09
13 16 0.15
14 54 0.50
15 4 0.04
16 19 0.17
17 1 0.01
ACGTcount: A:0.45, C:0.04, G:0.22, T:0.29
Consensus pattern (14 bp):
ATTGAAGAATTGAA
Found at i:1353 original size:6 final size:6
Alignment explanation
Indices: 1328--1440 Score: 55
Period size: 6 Copynumber: 16.3 Consensus size: 6
1318 AGCATTGAAG
* * *
1328 AATTGA ATTTGA AGATTTGA AATTGA AATTGA AGCGTTGAA GAATGGA
1 AATTGA AATTGA A-A-TTGA AATTGA AATTGA A--ATTG-A -AATTGA
1376 AATTGAA ACATTGA AGCATTGAA GAATTGA AATTGA GAATTGA AATTGAA
1 AATTG-A A-ATTGA A--ATTG-A -AATTGA AATTGA -AATTGA AATTG-A
*
1426 ACATTGA AGTTGA AA
1 A-ATTGA AATTGA AA
1441 GAAATATTGA
Statistics
Matches: 85, Mismatches: 8, Indels: 28
0.70 0.07 0.23
Matches are distributed among these distances:
6 37 0.44
7 17 0.20
8 27 0.32
9 2 0.02
10 2 0.02
ACGTcount: A:0.45, C:0.04, G:0.22, T:0.29
Consensus pattern (6 bp):
AATTGA
Found at i:1389 original size:22 final size:22
Alignment explanation
Indices: 1320--1502 Score: 143
Period size: 22 Copynumber: 8.6 Consensus size: 22
1310 AAAATCCAAG
*
1320 CATTGAAGAATTGAATTTGAAGA
1 CATTGAAGAATTGAAATTGAA-A
* *
1343 -TTTG-A-AATTGAAATTGAAG
1 CATTGAAGAATTGAAATTGAAA
* *
1362 CGTTGAAGAATGGAAATTGAAA
1 CATTGAAGAATTGAAATTGAAA
*
1384 CATTGAAGCATTGAAGAATTG-AA
1 CATTGAAGAATTG-A-AATTGAAA
1407 -ATTG-AGAATTGAAATTGAAA
1 CATTGAAGAATTGAAATTGAAA
1427 CATTGAAG--TTGAAA--GAAA
1 CATTGAAGAATTGAAATTGAAA
* * *
1445 TATTGAAGAATTGCAATTGAAG
1 CATTGAAGAATTGAAATTGAAA
* * **
1467 CATTGAAGATTTGGAATTGAGG
1 CATTGAAGAATTGAAATTGAAA
*
1489 CATTGAATAATTGA
1 CATTGAAGAATTGA
1503 GGAACGGAAG
Statistics
Matches: 128, Mismatches: 20, Indels: 25
0.74 0.12 0.14
Matches are distributed among these distances:
18 11 0.09
19 5 0.04
20 29 0.23
21 12 0.09
22 63 0.49
23 3 0.02
24 5 0.04
ACGTcount: A:0.43, C:0.04, G:0.23, T:0.30
Consensus pattern (22 bp):
CATTGAAGAATTGAAATTGAAA
Found at i:1391 original size:30 final size:29
Alignment explanation
Indices: 1336--1474 Score: 121
Period size: 30 Copynumber: 4.9 Consensus size: 29
1326 AGAATTGAAT
* *
1336 TTGAAGATTTGAAATTG-AAATTGAAGCG
1 TTGAAGAATTGAAATTGAAAATTGAAGCA
*
1364 TTGAAGAATGGAAATTGAAACATTGAAGCA
1 TTGAAGAATTGAAATTGAAA-ATTGAAGCA
*
1394 TTGAAGAATTGAAATTGAGAATTGAA--A
1 TTGAAGAATTGAAATTGAAAATTGAAGCA
* **
1421 TTGAA-ACATTGAAGTTG-AAA--GAAATA
1 TTGAAGA-ATTGAAATTGAAAATTGAAGCA
* *
1447 TTGAAGAATTGCAATTGAAGCATTGAAG
1 TTGAAGAATTGAAATTGAA-AATTGAAG
1475 ATTTGGAATT
Statistics
Matches: 90, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
24 3 0.03
26 17 0.19
27 17 0.19
28 16 0.18
29 8 0.09
30 29 0.32
ACGTcount: A:0.45, C:0.04, G:0.23, T:0.28
Consensus pattern (29 bp):
TTGAAGAATTGAAATTGAAAATTGAAGCA
Found at i:1609 original size:8 final size:8
Alignment explanation
Indices: 1596--1685 Score: 69
Period size: 8 Copynumber: 11.2 Consensus size: 8
1586 TCATTGAAGT
1596 GAATTGAA
1 GAATTGAA
1604 GAATTGAA
1 GAATTGAA
* *
1612 GCATTG-C
1 GAATTGAA
1619 GTAATTGAA
1 G-AATTGAA
*
1628 AAATTGAA
1 GAATTGAA
1636 GCAA-T-AA
1 G-AATTGAA
*
1643 GTAATCGAA
1 G-AATTGAA
1652 GAATTGAA
1 GAATTGAA
*
1660 GTATTGAA
1 GAATTGAA
*
1668 TAATTGAA
1 GAATTGAA
*
1676 GAATGGAA
1 GAATTGAA
1684 GA
1 GA
1686 GTTGGATCAT
Statistics
Matches: 63, Mismatches: 14, Indels: 10
0.72 0.16 0.11
Matches are distributed among these distances:
7 6 0.10
8 52 0.83
9 5 0.08
ACGTcount: A:0.47, C:0.04, G:0.23, T:0.26
Consensus pattern (8 bp):
GAATTGAA
Found at i:1625 original size:24 final size:24
Alignment explanation
Indices: 1587--1684 Score: 106
Period size: 24 Copynumber: 4.0 Consensus size: 24
1577 CACTCCGGGT
1587 CATTGAAGTGAATTGAAGAATTGAAG
1 CATTG-AGT-AATTGAAGAATTGAAG
* *
1613 CATTGCGTAATTGAAAAATTGAAG
1 CATTGAGTAATTGAAGAATTGAAG
* * *
1637 CAATAAGTAATCGAAGAATTGAAG
1 CATTGAGTAATTGAAGAATTGAAG
* * *
1661 TATTGAATAATTGAAGAATGGAAG
1 CATTGAGTAATTGAAGAATTGAAG
1685 AGTTGGATCA
Statistics
Matches: 59, Mismatches: 13, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
24 52 0.88
25 2 0.03
26 5 0.08
ACGTcount: A:0.45, C:0.05, G:0.23, T:0.27
Consensus pattern (24 bp):
CATTGAGTAATTGAAGAATTGAAG
Found at i:1656 original size:48 final size:49
Alignment explanation
Indices: 1592--1684 Score: 125
Period size: 48 Copynumber: 1.9 Consensus size: 49
1582 CGGGTCATTG
* ** *
1592 AAGTGAATTGAAGAATTGAAGCATTGCGTAATTGAAAAATTGAAGCAAT
1 AAGTGAATCGAAGAATTGAAGCATTGAATAATTGAAAAATGGAAGCAAT
* *
1641 AAGT-AATCGAAGAATTGAAGTATTGAATAATTGAAGAATGGAAG
1 AAGTGAATCGAAGAATTGAAGCATTGAATAATTGAAAAATGGAAG
1685 AGTTGGATCA
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
48 34 0.89
49 4 0.11
ACGTcount: A:0.46, C:0.04, G:0.24, T:0.26
Consensus pattern (49 bp):
AAGTGAATCGAAGAATTGAAGCATTGAATAATTGAAAAATGGAAGCAAT
Found at i:2697 original size:8 final size:8
Alignment explanation
Indices: 2686--2724 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
2676 TCTTTTCCAT
2686 TTTTTTCA
1 TTTTTTCA
*
2694 TTTTCTCA
1 TTTTTTCA
2702 TTTTTT-A
1 TTTTTTCA
2709 -TTTTTCA
1 TTTTTTCA
2716 TTTTTTCA
1 TTTTTTCA
2724 T
1 T
2725 CAATTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 5 0.19
7 2 0.07
8 20 0.74
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (8 bp):
TTTTTTCA
Found at i:2712 original size:6 final size:7
Alignment explanation
Indices: 2687--2720 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
2677 CTTTTCCATT
2687 TTTTTCA
1 TTTTTCA
2694 TTTTCTCA
1 TTTT-TCA
*
2702 TTTTTTA
1 TTTTTCA
2709 TTTTTCA
1 TTTTTCA
2716 TTTTT
1 TTTTT
2721 TCATCAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 17 0.71
8 7 0.29
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTTCA
Found at i:2716 original size:14 final size:16
Alignment explanation
Indices: 2686--2724 Score: 64
Period size: 14 Copynumber: 2.6 Consensus size: 16
2676 TCTTTTCCAT
2686 TTTTTTCATTTTCTCA
1 TTTTTTCATTTTCTCA
2702 TTTTTT-ATTTT-TCA
1 TTTTTTCATTTTCTCA
2716 TTTTTTCAT
1 TTTTTTCAT
2725 CAATTTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 9 0.41
15 7 0.32
16 6 0.27
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTTTTCATTTTCTCA
Found at i:2734 original size:22 final size:21
Alignment explanation
Indices: 2685--2735 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
2675 CTCTTTTCCA
**
2685 TTTTTTTCATTTTCTCATTTT
1 TTTTTTTCATTTTCTCATAAT
*
2706 TTATTTTTCATTTTTTCATCAAT
1 TT-TTTTTCATTTTCTCAT-AAT
2729 TTTTTTT
1 TTTTTTT
2736 GCACTTGGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 2 0.08
22 20 0.80
23 3 0.12
ACGTcount: A:0.14, C:0.12, G:0.00, T:0.75
Consensus pattern (21 bp):
TTTTTTTCATTTTCTCATAAT
Found at i:3454 original size:32 final size:33
Alignment explanation
Indices: 3407--3471 Score: 114
Period size: 32 Copynumber: 2.0 Consensus size: 33
3397 TTGAAAGACA
*
3407 CTTTTAAAAAACATTTTTGAAAATCATGACTCT
1 CTTTTAAAAAACATTTTTGAAAACCATGACTCT
3440 CTTTT-AAAAACATTTTTGAAAACCATGACTCT
1 CTTTTAAAAAACATTTTTGAAAACCATGACTCT
3472 ATTTATTCCA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 26 0.84
33 5 0.16
ACGTcount: A:0.38, C:0.17, G:0.06, T:0.38
Consensus pattern (33 bp):
CTTTTAAAAAACATTTTTGAAAACCATGACTCT
Done.