Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009873.1 Corchorus capsularis cultivar CVL-1 contig09894, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4137
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34


Found at i:4009 original size:7 final size:7

Alignment explanation


    Indices: 3997--4022  Score: 52
    Period size: 7  Copynumber: 3.7  Consensus size: 7

       3987 ACCCATTCAT

                   
       3997 ATATACA
          1 ATATACA

                   
       4004 ATATACA
          1 ATATACA

                   
       4011 ATATACA
          1 ATATACA

                 
       4018 ATATA
          1 ATATA

       4023 TAAATAGAAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   19  1.00

ACGTcount: A:0.58, C:0.12, G:0.00, T:0.31


Consensus pattern (7 bp):   
ATATACA
Done.