Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009874.1 Corchorus capsularis cultivar CVL-1 contig09895, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8609

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1196--1281
45
1.9
45
83
4
111
26
17
27
27
1.98
1507--1561
12
4.5
12
88
4
83
34
14
21
29
1.93
1507--1561
25
2.2
24
90
3
83
34
14
21
29
1.93
2640--2672
3
11.3
3
93
6
59
33
36
0
30
1.58
3543--3581
12
3.6
12
74
25
50
30
15
28
25
1.96
3789--3858
30
2.4
30
87
2
106
14
28
14
42
1.84
4040--4102
29
2.1
30
94
2
110
39
14
23
22
1.91
4796--4832
18
2.1
18
100
0
74
40
27
10
21
1.86
5097--5160
29
2.1
31
83
11
80
42
14
18
25
1.88
5816--5843
2
14.0
2
100
0
56
50
0
0
50
1.00
7491--7562
36
2.0
36
94
0
126
36
15
27
20
1.93
7883--7911
4
7.2
4
100
0
58
0
24
0
75
0.80
7989--8033
23
1.9
24
86
4
65
33
6
6
53
1.53

Tables:   1

The End!