Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009876.1 Corchorus capsularis cultivar CVL-1 contig09897, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2074
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.29


Found at i:800 original size:21 final size:21

Alignment explanation


    Indices: 776--824  Score: 62
    Period size: 21  Copynumber: 2.3  Consensus size: 21

        766 CAGCTGGGGG

                          * *   *
        776 CCCATGTGGTATGCTTGGCGC
          1 CCCATGTGGTATGCCTCGCGA

                      *          
        797 CCCATGTGGTTTGCCTCGCGA
          1 CCCATGTGGTATGCCTCGCGA

                   
        818 CCCATGT
          1 CCCATGT

        825 CCTCCAGAGC


Statistics
Matches: 24,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.10, C:0.33, G:0.29, T:0.29


Consensus pattern (21 bp):   
CCCATGTGGTATGCCTCGCGA
Done.