Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009878.1 Corchorus capsularis cultivar CVL-1 contig09899, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17508

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
244--688
168
2.7
165
85
4
599
39
16
15
29
1.89
8149--8176
13
2.2
13
100
0
56
39
14
0
46
1.44
7916--8394
245
2.0
245
96
0
879
43
12
6
37
1.68
8746--8792
22
2.1
23
88
4
69
57
8
2
31
1.41
8757--8806
22
2.3
22
82
6
57
60
6
2
32
1.32
8770--8808
15
2.6
15
83
0
51
56
5
2
35
1.35
10344--10375
3
10.7
3
100
0
64
65
0
0
34
0.93
15337--15380
22
2.0
22
82
8
54
45
13
2
38
1.56
15525--15610
45
1.9
45
83
4
111
38
16
11
33
1.85
15481--15954
22
21.7
22
69
12
187
37
14
9
38
1.78
15702--15785
23
3.7
23
77
6
91
41
9
4
44
1.58
16097--16321
22
10.3
22
72
10
122
35
13
9
41
1.76
16117--16241
44
2.9
44
78
8
139
38
11
8
41
1.72
16069--16237
88
1.9
87
82
5
207
36
12
8
42
1.74
16209--16247
21
2.0
19
85
14
53
41
7
5
46
1.55
16160--16321
67
2.5
64
78
14
161
35
12
9
41
1.76
16097--16358
22
11.7
22
66
18
78
35
13
9
41
1.77
16341--16437
22
4.4
22
68
10
72
38
16
11
34
1.84
16501--16639
22
6.2
21
75
12
107
38
16
9
35
1.81
16555--16639
21
3.9
21
81
17
93
35
14
11
38
1.82
16732--16817
45
1.9
45
83
4
111
38
16
11
33
1.85
16556--16924
22
16.7
22
68
14
113
37
14
10
37
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16938--16987
25
2.0
25
96
0
91
44
2
14
40
1.56
16942--16994
25
2.3
23
84
12
65
50
1
9
37
1.46
17316--17353
20
2.0
20
89
5
60
18
13
15
52
1.74

Tables:   1

The End!