genome.fa.s9880.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009880.1 Corchorus capsularis cultivar CVL-1 contig09901, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  169613

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1333--1382	23	2.2	23	96	3	93	16	38	10	36	1.82
6319--7375	221	4.8	221	87	5	1447	35	7	20	36	1.80
10158--10304	39	3.8	39	86	2	190	44	27	10	17	1.81
10463--11426	477	2.0	477	98	0	1883	34	19	23	23	1.97
12973--13173	101	2.0	102	98	1	386	29	21	23	25	1.99
14935--15273	71	4.9	71	79	14	384	20	28	17	32	1.96
15037--15160	62	2.0	61	80	12	137	21	27	14	36	1.93
15547--15666	38	3.2	38	64	17	104	32	35	8	24	1.85
15537--15685	76	2.0	76	98	0	289	32	34	8	24	1.86
15572--15693	38	3.2	40	64	17	103	31	37	8	22	1.83
16005--16035	16	1.9	16	93	0	53	32	16	29	22	1.95
18376--18422	23	2.0	23	95	0	85	21	34	29	14	1.93
19469--19495	9	3.0	9	100	0	54	88	0	0	11	0.50
25423--25469	24	2.1	23	88	11	71	48	14	12	23	1.78
25702--25731	6	5.0	6	95	0	51	63	16	3	16	1.44
26780--26841	2	31.0	2	79	12	65	48	3	1	46	1.28
37427--37494	27	2.5	27	81	9	77	32	23	16	27	1.96
41374--41405	12	2.7	12	95	0	55	21	43	25	9	1.82
41429--41493	33	2.0	33	87	6	96	24	36	29	9	1.86
44508--44532	10	2.5	10	100	0	50	48	20	8	24	1.76
45464--45496	6	5.5	6	100	0	66	30	0	15	54	1.41
45783--45861	36	2.2	36	84	6	106	32	12	6	48	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59074--60481	712	2.0	712	97	0	2636	32	12	19	34	1.90
61874--61905	15	2.1	15	94	0	55	50	21	15	12	1.77
66781--66831	25	2.0	27	84	7	70	64	7	7	19	1.44
67991--68050	30	2.0	30	83	6	77	33	15	5	46	1.67
72011--72048	20	1.9	20	88	0	58	42	2	2	52	1.29
76021--76058	20	2.0	20	94	5	69	15	5	21	57	1.57
77922--77976	20	2.7	21	83	10	69	78	0	1	20	0.85
77922--77975	21	2.6	19	81	16	63	77	0	1	20	0.86
77922--77976	14	4.1	13	82	13	67	78	0	1	20	0.85
77922--77976	7	8.2	6	79	20	56	78	0	1	20	0.85
79076--79103	1	28.0	1	100	0	56	0	0	0	100	0.00
81632--81707	31	2.6	29	81	8	73	30	18	14	36	1.91
88050--88081	12	2.7	12	95	0	55	34	37	15	12	1.85
93433--93468	2	18.0	2	94	0	63	47	2	0	50	1.15
103057--103091	16	2.2	16	100	0	70	45	17	25	11	1.81
104831--104855	3	8.3	3	100	0	50	36	0	0	64	0.94
105497--105530	17	1.9	18	88	5	52	73	0	2	23	0.97
109451--109497	21	2.2	21	92	0	76	29	8	6	55	1.55
109933--110078	16	9.2	16	82	5	165	31	36	22	8	1.85
116407--116480	22	3.3	22	70	10	69	8	22	45	22	1.78
120414--120483	22	3.1	22	74	11	79	8	21	47	22	1.78
135145--135180	18	1.9	19	88	5	56	33	25	5	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136082--136135	16	3.4	16	80	14	76	5	18	38	37	1.74
136956--137057	16	6.4	16	76	4	98	8	22	37	31	1.85
136954--137057	32	3.3	31	82	2	109	8	23	36	31	1.85
137097--137126	16	1.9	15	93	6	51	0	16	56	26	1.40
146031--146083	20	2.6	20	93	3	88	15	30	37	16	1.90
146239--146309	31	2.2	32	85	2	90	40	36	14	8	1.76
146239--146309	16	4.5	16	78	3	81	40	36	14	8	1.76
147562--147593	16	2.0	16	93	0	55	43	37	15	3	1.63
152751--152789	13	3.2	12	86	13	53	0	2	7	89	0.56
152748--152787	20	2.1	18	86	9	53	0	5	7	87	0.66
154140--154181	21	2.0	21	86	4	59	23	9	35	30	1.87
158478--158945	49	9.7	49	82	4	407	31	16	29	22	1.96
158492--158956	96	4.8	97	79	6	408	32	15	29	22	1.95
160298--160343	24	2.0	23	82	4	56	6	28	8	56	1.54
161703--161751	23	2.1	23	92	0	80	48	10	6	34	1.62
168606--168651	17	2.5	19	89	6	69	34	0	0	65	0.93
168617--168652	13	2.8	13	91	4	56	38	0	0	61	0.96

Tables:   1

The End!