Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009881.1 Corchorus capsularis cultivar CVL-1 contig09902, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28220

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5690--5714
2
12.5
2
100
0
50
52
0
0
48
1.00
9957--10216
107
2.4
108
92
5
423
38
11
1
47
1.51
16166--16195
15
2.0
15
93
0
51
0
16
0
83
0.65
22567--22620
21
2.5
21
87
3
72
33
9
14
42
1.78
22697--22782
45
1.9
45
83
4
111
38
16
11
33
1.85
22567--23190
22
29.0
22
71
12
191
35
15
9
39
1.79
23116--23182
19
3.5
18
86
10
89
23
19
11
44
1.84
23294--23503
22
9.5
22
73
10
142
34
12
9
43
1.76
23264--23454
44
4.4
43
76
10
158
36
11
9
42
1.73
23294--23454
66
2.5
67
79
7
170
34
13
9
42
1.76
23263--23429
88
1.9
88
82
4
212
34
12
10
42
1.77
23418--23480
25
2.7
23
83
11
76
38
4
7
49
1.53
23470--23517
21
2.3
22
79
17
57
29
14
12
43
1.82
23294--23650
22
16.0
22
69
17
120
35
14
9
41
1.78
23714--23876
22
7.3
22
80
8
100
38
19
10
31
1.86
23721--23845
44
2.8
43
83
7
135
37
17
10
34
1.84
23768--23851
44
1.9
44
97
0
159
34
15
14
35
1.88
23768--23875
44
2.5
44
86
6
112
35
17
12
34
1.88
23962--24025
30
2.1
31
88
2
94
51
4
15
28
1.63
26856--26927
29
2.5
28
80
8
83
25
13
13
47
1.80

Tables:   1

The End!