Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009887.1 Corchorus capsularis cultivar CVL-1 contig09908, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8537
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33


Found at i:5557 original size:15 final size:15

Alignment explanation


    Indices: 5537--5568  Score: 64
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       5527 TTTAAAACAC

                           
       5537 TGGAATGCATTTTTA
          1 TGGAATGCATTTTTA

                           
       5552 TGGAATGCATTTTTA
          1 TGGAATGCATTTTTA

              
       5567 TG
          1 TG

       5569 TATAAATATG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.25, C:0.06, G:0.22, T:0.47


Consensus pattern (15 bp):   
TGGAATGCATTTTTA
Done.