Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000989.1 Corchorus capsularis cultivar CVL-1 contig00989, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 630

Length: 1050
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34


Found at i:936 original size:31 final size:32

Alignment explanation


    Indices: 901--984  Score: 98
    Period size: 31  Copynumber: 2.7  Consensus size: 32

        891 TATTTCCAAC

                                  *         
        901 TGGTCCAATGTGGCATTGTCACGTGACA-TTT
          1 TGGTCCAATGTGGCATTGTCACATGACATTTT

                 *            *      *      
        932 TGGTCTAATGTGGCATTGCCACATGGCATTTT
          1 TGGTCCAATGTGGCATTGTCACATGACATTTT

                  * **           
        964 TGGTCCGACATGGCATTGTCA
          1 TGGTCCAATGTGGCATTGTCA

        985 TTGTCAACAA


Statistics
Matches: 43,  Mismatches: 9, Indels: 1
        0.81            0.17        0.02

Matches are distributed among these distances:
  31   24  0.56
  32   19  0.44

ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35


Consensus pattern (32 bp):   
TGGTCCAATGTGGCATTGTCACATGACATTTT
Done.