Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009891.1 Corchorus capsularis cultivar CVL-1 contig09912, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34283

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--34
2
17.0
2
100
0
68
50
0
0
50
1.00
338--429
16
5.6
16
71
16
62
32
34
22
9
1.87
592--620
15
1.9
15
100
0
58
51
6
6
34
1.55
2210--2539
178
1.9
178
84
5
452
35
13
15
35
1.87
3303--3411
53
2.1
53
100
0
218
32
20
11
36
1.87
4647--4677
2
15.5
2
100
0
62
51
0
0
48
1.00
5286--5378
22
4.5
22
65
26
78
50
21
3
24
1.63
5396--5441
22
2.1
22
87
0
65
21
30
10
36
1.88
5631--5673
21
2.0
21
91
8
70
16
27
44
11
1.82
8017--8049
4
8.2
4
93
0
57
21
0
0
78
0.75
14089--14127
9
4.3
9
80
0
51
35
0
38
25
1.56
16795--16820
13
2.0
13
100
0
52
92
0
7
0
0.39
16795--16824
15
2.0
15
93
0
51
90
0
10
0
0.47
17182--17216
18
1.9
18
100
0
70
62
0
5
31
1.18
18803--18837
18
1.9
18
100
0
70
62
0
5
31
1.18
19577--20799
510
2.4
511
93
2
2067
37
15
11
35
1.84
20608--22503
848
2.2
846
88
3
2781
35
17
12
34
1.88

Tables:   1

The End!