Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009894.1 Corchorus capsularis cultivar CVL-1 contig09915, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58048

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100--316
80
2.7
81
83
2
267
24
36
5
32
1.80
100--342
81
3.0
78
77
10
231
24
37
6
31
1.82
319--362
22
2.1
21
84
12
56
29
36
11
22
1.89
231--418
103
1.8
103
84
0
259
25
35
8
30
1.86
235--445
103
2.0
102
80
5
228
25
34
8
31
1.86
906--960
22
2.5
23
79
5
69
36
10
10
41
1.75
968--1032
21
2.8
24
86
11
91
33
10
9
46
1.71
969--1051
21
3.7
22
79
19
84
34
8
10
45
1.69
969--1144
21
7.9
22
68
22
73
34
13
8
43
1.75
1090--1227
22
6.4
21
71
15
79
36
18
6
38
1.77
1263--1446
22
8.3
22
75
8
104
38
19
9
33
1.84
1270--1414
44
3.2
44
83
5
150
36
18
10
34
1.85
1861--1921
31
2.0
31
87
6
88
52
3
14
29
1.58
11186--11214
11
2.5
12
88
11
51
58
0
10
31
1.31
11678--11743
2
32.5
2
80
8
64
48
1
6
43
1.36
12975--13044
36
1.9
36
100
0
140
42
20
5
31
1.75
13447--13501
28
1.9
29
92
3
94
61
0
3
34
1.13
22765--22816
3
17.7
3
96
4
97
65
0
0
34
0.93
26243--26306
30
2.1
30
100
0
128
23
15
9
51
1.72
40256--40333
41
1.9
41
89
0
120
37
8
20
33
1.84
40390--40486
33
2.9
33
79
8
92
13
32
37
16
1.88
40645--40795
71
2.1
71
82
4
180
25
12
17
45
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40784--40951
47
3.5
48
72
17
161
26
17
17
38
1.92
40776--40964
94
2.0
96
93
2
328
26
18
17
37
1.93
48122--48154
3
11.0
3
100
0
66
66
0
33
0
0.92
51832--51877
24
1.9
24
100
0
92
39
10
8
41
1.71
53952--53996
22
2.1
21
87
4
63
51
13
22
13
1.75
57958--58003
22
2.0
23
84
12
60
36
28
0
34
1.58

Tables:   1

The End!