Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009895.1 Corchorus capsularis cultivar CVL-1 contig09916, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83490

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4993--5082
45
2.0
45
97
0
171
43
15
15
25
1.86
6074--6099
11
2.4
11
100
0
52
76
0
7
15
0.99
8806--8847
3
13.0
3
95
5
57
69
0
30
0
0.89
8805--8847
15
2.6
18
85
14
65
69
0
30
0
0.88
16186--16241
27
2.1
27
86
6
78
51
0
48
0
1.00
16190--16239
21
2.4
22
83
10
68
52
0
48
0
1.00
19004--19032
14
2.1
14
93
6
51
0
17
0
82
0.66
24383--24438
27
2.2
27
84
9
73
25
25
12
37
1.91
26693--26739
19
2.5
19
100
0
94
44
19
19
17
1.87
28188--28220
16
2.1
16
94
0
57
36
21
6
36
1.78
28282--28368
42
2.1
41
95
2
156
19
24
13
42
1.87
28386--28412
13
2.1
13
100
0
54
55
22
7
14
1.64
28594--28629
18
2.0
18
94
0
63
16
19
16
47
1.83
29233--29302
30
2.4
30
90
2
106
35
22
5
35
1.78
29503--29548
23
2.0
23
86
0
65
63
10
13
13
1.53
29998--30070
30
2.6
29
91
8
123
12
10
17
58
1.61
39645--39685
20
2.0
21
90
4
66
19
2
31
46
1.63
39649--39699
21
2.3
22
74
22
52
19
3
33
43
1.70
44898--45004
53
2.0
53
92
0
178
42
11
6
39
1.66
45483--45572
44
2.0
44
97
0
171
28
12
18
40
1.87
46142--46502
60
6.0
60
88
1
472
29
22
22
26
1.99
53138--53186
3
16.3
3
91
8
82
65
0
0
34
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55304--55343
6
6.7
6
91
0
62
35
2
15
47
1.58
64358--64431
28
2.6
28
100
0
148
27
5
9
58
1.51
66242--66485
125
2.0
125
99
0
479
24
22
32
19
1.97
66848--66912
23
2.9
22
79
4
67
40
15
12
32
1.84
66964--67065
23
4.5
22
81
6
91
38
14
9
37
1.80
66832--67273
22
20.4
22
69
13
188
35
15
10
38
1.83
67222--67273
20
2.6
20
93
0
86
26
15
11
46
1.80
67381--67432
22
2.4
22
87
3
79
36
11
9
42
1.74
67379--67451
22
3.3
22
82
3
58
32
15
10
41
1.82
67463--67515
22
2.4
22
87
6
72
32
13
13
41
1.82
67637--67762
22
5.7
22
72
10
96
36
18
9
35
1.83
67663--67762
44
2.3
44
81
6
114
36
20
9
35
1.84
68626--68703
38
2.1
37
90
2
120
58
11
16
12
1.62
69399--69471
22
3.5
22
70
11
71
16
15
6
61
1.53
69390--69472
41
2.0
41
95
0
148
14
18
6
61
1.53
74053--74111
20
3.0
20
79
0
73
35
10
18
35
1.85
77192--77232
6
6.8
6
97
0
73
34
12
2
51
1.52
77572--77622
25
2.0
25
88
0
75
43
7
9
39
1.67
78259--78301
20
2.2
20
95
0
77
46
11
0
41
1.40
82336--82394
3
19.7
3
100
0
118
66
0
0
33
0.92
83034--83069
16
2.2
16
95
0
63
58
5
11
25
1.54

Tables:   1

The End!