genome.fa.s9901.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009901.1 Corchorus capsularis cultivar CVL-1 contig09922, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114020

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4937--4966	12	2.6	12	94	5	53	83	0	16	0	0.65
11593--11674	41	2.0	41	100	0	164	29	24	9	36	1.87
11919--12001	42	1.9	43	85	9	116	30	19	19	31	1.96
13108--13515	203	2.0	198	85	3	548	34	17	15	32	1.91
62765--63175	182	2.2	184	82	4	474	31	16	17	34	1.92
65347--65383	17	2.1	18	95	5	67	27	35	10	27	1.90
67608--67994	171	2.3	172	88	0	587	33	20	14	31	1.93
67990--68131	53	2.7	53	89	0	212	31	21	11	34	1.90
71168--71292	53	2.4	51	83	2	160	31	20	12	36	1.90
72203--72434	53	4.4	53	96	0	410	29	20	14	35	1.92
91887--91925	20	1.9	20	89	5	60	58	7	2	30	1.39
91932--92087	73	2.1	74	95	1	278	39	9	30	20	1.84
92197--92320	65	1.9	65	100	0	248	52	1	11	34	1.47
96320--96349	14	2.1	14	100	0	60	23	6	0	70	1.11
97198--97237	7	5.6	7	90	3	62	55	0	0	45	0.99
99226--99383	59	2.7	60	87	2	219	36	13	17	32	1.88
99427--99582	60	2.6	60	84	7	183	26	16	18	37	1.92
101361--101387	1	27.0	1	100	0	54	0	0	0	100	0.00
101831--101892	22	2.8	23	80	7	83	35	12	14	37	1.85
102718--102792	38	2.0	37	97	2	141	26	13	18	41	1.87
103518--103568	16	3.1	16	71	18	50	37	5	7	49	1.56
103518--103571	18	3.1	18	76	10	67	37	5	7	50	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105765--105803	20	1.9	20	84	5	51	25	7	0	66	1.18
106284--106365	41	2.0	41	97	0	155	15	0	23	60	1.35
106330--106399	28	2.5	28	79	9	72	24	0	20	55	1.43
106593--106632	19	2.1	19	85	0	53	32	10	0	57	1.32
108199--108238	18	2.2	18	86	8	55	85	10	2	2	0.80

Tables:   1

The End!