Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009902.1 Corchorus capsularis cultivar CVL-1 contig09923, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66385

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
417--684
134
2.0
133
98
0
518
41
7
13
37
1.73
1985--2026
22
2.0
23
86
13
63
35
7
7
50
1.57
8676--8740
30
2.2
30
88
0
94
16
20
46
16
1.85
24323--24355
6
5.7
6
92
7
59
51
0
0
48
1.00
24323--24356
11
3.0
11
95
4
59
52
0
0
47
1.00
24316--24355
17
2.6
15
88
11
55
50
0
0
50
1.00
24824--25060
70
3.2
70
82
12
285
37
13
0
48
1.45
24824--25066
81
3.2
78
87
8
313
37
12
0
49
1.44
26018--26060
20
2.3
19
81
18
54
55
2
2
39
1.25
26481--26829
175
2.0
175
93
0
590
30
13
19
36
1.90
56262--56317
28
1.9
30
85
7
80
41
21
10
26
1.86
57282--57458
91
1.9
92
87
2
257
45
14
8
31
1.75
61453--61507
21
2.6
21
83
11
60
32
5
5
56
1.45
61830--61883
22
2.4
23
81
12
67
35
3
3
57
1.34
62020--62111
16
5.8
16
85
0
112
43
40
11
4
1.61
62026--62111
32
2.7
32
94
0
145
43
39
12
4
1.64

Tables:   1

The End!