Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009907.1 Corchorus capsularis cultivar CVL-1 contig09928, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68416

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1365--1427
30
2.1
30
88
5
92
42
6
25
25
1.78
1673--1770
48
2.0
48
100
0
196
44
14
18
22
1.85
7088--7350
90
3.0
90
89
4
392
44
17
10
27
1.82
15451--15484
6
5.7
6
96
0
50
26
50
17
5
1.69
17951--17975
12
2.1
12
100
0
50
44
8
24
24
1.80
26181--26225
17
2.6
17
92
0
72
42
20
13
24
1.87
26237--26281
19
2.3
20
81
11
58
64
0
2
33
1.06
26240--26281
15
3.0
14
83
10
50
64
0
2
33
1.07
26367--26409
19
2.3
18
84
11
59
65
0
2
32
1.06
26375--26412
12
2.9
13
84
11
51
68
0
0
31
0.90
26609--26719
57
1.9
57
96
0
204
36
14
16
32
1.89
26896--26935
21
1.9
21
89
0
62
30
40
2
27
1.70
31044--31093
23
2.1
24
96
3
93
20
22
16
42
1.89
39208--39385
89
2.0
89
100
0
356
31
15
24
28
1.96
45261--45424
81
2.0
81
100
0
328
25
3
23
47
1.68
45932--45970
20
1.9
20
89
5
60
58
7
2
30
1.39
45977--46131
73
2.1
74
91
2
251
40
9
29
21
1.84
46288--46321
2
17.0
2
100
0
68
50
0
0
50
1.00
48385--48435
25
2.0
25
100
0
102
19
27
0
52
1.46
48743--48785
22
2.0
22
86
4
61
51
32
0
16
1.45
49649--49691
22
2.0
22
86
4
61
51
32
0
16
1.45
52943--53216
109
2.5
109
91
5
419
48
1
11
38
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53301--53341
2
21.0
2
80
14
50
48
0
4
46
1.23
55727--55755
1
29.0
1
100
0
58
0
0
0
100
0.00
55753--55872
16
7.6
16
79
9
147
7
19
36
36
1.80
55755--55898
48
3.0
49
85
7
181
7
20
38
34
1.81
55753--55887
16
8.5
17
77
12
110
7
20
37
35
1.80
57773--57803
16
1.9
16
93
0
53
9
22
38
29
1.86
58203--58234
2
16.0
2
100
0
64
50
0
0
50
1.00
58232--58260
4
7.2
4
100
0
58
24
0
24
51
1.48
59092--59129
18
2.1
18
100
0
76
52
31
0
15
1.43
63614--63747
67
2.0
67
100
0
268
31
22
17
28
1.97

Tables:   1

The End!