Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009908.1 Corchorus capsularis cultivar CVL-1 contig09929, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33373

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
458--564
29
3.6
29
79
3
97
17
28
16
36
1.92
630--703
29
2.5
30
80
8
98
36
17
29
16
1.92
1540--2825
646
2.0
645
94
0
2263
36
14
15
33
1.88
3076--3231
73
2.1
74
93
1
269
21
28
9
40
1.84
10248--10283
13
2.8
13
91
8
56
2
0
13
83
0.76
13836--13985
22
6.8
22
77
2
158
37
14
11
37
1.81
13836--13985
44
3.4
44
91
3
232
37
14
11
37
1.81
14021--14091
22
3.3
22
78
3
65
23
16
9
49
1.76
14267--14292
2
13.0
2
100
0
52
50
0
0
50
1.00
18060--18095
19
1.9
18
88
5
54
41
2
22
33
1.68
19514--19549
19
1.9
18
88
5
54
41
2
22
33
1.68
23066--23099
17
2.1
16
88
5
50
29
2
8
58
1.43
23074--23114
21
1.9
22
90
5
66
34
2
7
56
1.40
23463--23525
15
4.4
14
72
22
51
26
7
1
63
1.31
23473--23528
27
2.1
27
86
6
78
25
7
1
66
1.27
26046--26090
21
2.1
22
83
4
56
42
8
8
40
1.67
26062--26117
22
2.6
21
80
11
60
39
12
7
41
1.70
26133--26171
19
2.1
19
100
0
78
43
5
5
46
1.48
28154--28200
22
2.1
22
100
0
94
46
4
4
44
1.42
28470--28636
22
7.6
21
65
14
70
44
10
11
33
1.75
28483--28636
44
3.5
43
74
9
132
42
11
11
34
1.77
28662--28731
22
3.2
21
81
4
77
34
5
22
37
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28862--28963
22
4.6
22
77
0
87
32
13
17
36
1.89
28868--28985
44
2.7
44
76
8
123
33
12
16
36
1.87
28846--28985
22
6.4
21
75
11
77
35
12
15
36
1.85
28949--28997
22
2.3
22
89
3
73
36
10
12
40
1.77
29902--30004
16
6.5
16
76
14
97
5
13
39
40
1.69
29915--30022
31
3.4
32
84
3
137
6
16
39
37
1.75
30507--30578
31
2.3
31
73
4
74
56
11
5
26
1.55

Tables:   1

The End!