Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009909.1 Corchorus capsularis cultivar CVL-1 contig09930, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37238

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4335--4364
15
2.1
15
93
6
53
0
6
16
76
0.99
4735--4800
32
2.1
32
91
0
105
39
9
21
30
1.84
16031--16171
21
6.5
21
71
11
63
35
13
9
41
1.78
16128--16198
22
3.3
22
78
3
65
23
16
9
49
1.76
27988--28050
15
4.4
14
72
22
51
26
7
1
63
1.31
27998--28053
27
2.1
27
86
6
78
25
7
1
66
1.27
30539--30594
22
2.5
22
83
11
71
39
14
7
39
1.73
32584--32771
22
8.6
21
66
15
78
43
11
11
32
1.77
32593--32704
44
2.5
44
81
8
129
41
12
11
34
1.79
32890--32940
22
2.3
23
86
3
68
25
7
23
43
1.81
32976--33119
22
6.6
22
80
4
103
32
12
16
38
1.86
32983--33099
44
2.7
44
80
5
137
31
12
18
36
1.89
32976--33119
66
2.2
65
79
6
157
32
12
16
38
1.86
36307--36365
19
2.9
22
78
19
74
45
22
10
22
1.81

Tables:   1

The End!