Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009911.1 Corchorus capsularis cultivar CVL-1 contig09932, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38847

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60--135
37
2.1
37
85
9
102
56
2
10
30
1.47
8840--8898
15
3.9
15
81
0
64
11
22
25
40
1.88
12693--12731
9
4.3
9
90
0
51
43
2
0
53
1.14
13051--13146
21
4.5
21
73
21
67
32
10
11
45
1.74
13129--13185
22
2.6
22
80
5
71
40
12
7
40
1.70
13421--13544
59
2.1
60
95
3
223
25
12
8
54
1.65
16992--17103
44
2.5
43
82
7
118
41
13
12
32
1.82
17021--17169
65
2.3
66
80
10
155
42
12
11
33
1.79
17022--17173
22
7.0
22
75
5
94
42
12
12
32
1.80
17298--17355
19
2.8
20
89
7
82
27
5
20
46
1.72
17410--17547
22
6.2
22
80
5
143
34
12
15
37
1.85
17414--17545
45
3.0
42
79
10
138
35
12
15
36
1.85
17410--17547
67
2.1
66
86
4
188
34
12
15
37
1.85
28907--28966
31
1.9
31
93
0
102
28
21
11
38
1.89
28965--29037
36
2.0
36
94
0
128
21
21
10
45
1.83
29235--29318
27
3.4
26
73
24
92
48
8
14
28
1.72
29853--29888
4
8.8
4
87
6
54
77
2
19
0
0.88
33442--33702
132
2.0
132
85
4
357
33
18
14
34
1.90
33703--34060
132
2.8
131
81
6
376
32
16
13
37
1.88
34121--34547
144
2.9
143
78
8
408
24
20
19
35
1.95
35205--35688
167
2.9
166
85
3
668
30
15
15
38
1.89
36279--36309
12
2.5
13
94
5
55
19
0
0
80
0.71

Tables:   1

The End!