Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009912.1 Corchorus capsularis cultivar CVL-1 contig09933, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27376

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4894--4958
25
2.7
25
86
11
84
52
1
1
44
1.19
6710--6790
29
2.7
30
79
7
94
34
18
18
28
1.95
6890--6981
29
3.1
30
75
15
100
38
17
13
31
1.88
7135--7176
22
1.9
22
95
0
75
59
16
2
21
1.48
10352--10416
10
7.3
10
71
25
56
41
4
10
43
1.60
10353--10427
16
4.9
16
72
21
63
42
4
10
42
1.58
10352--10430
26
3.0
26
94
3
131
41
3
10
44
1.56
12105--12168
31
2.1
29
85
5
83
25
15
18
40
1.90
12121--12178
29
2.0
30
82
3
73
27
18
17
36
1.94
12538--12763
112
2.0
115
92
4
379
30
13
7
47
1.72
16019--16060
2
21.5
2
90
4
68
47
0
0
52
1.00
17105--17137
16
2.1
16
94
5
59
39
42
12
6
1.67
17507--17931
33
12.8
33
78
3
431
32
19
35
12
1.89
18381--18604
49
4.6
49
81
5
231
41
19
24
14
1.89
18399--18688
47
6.2
45
77
11
214
38
19
26
14
1.91
18574--18743
40
4.1
39
75
15
144
37
21
24
16
1.93
18753--19342
41
14.1
41
79
10
527
37
21
25
15
1.92
18751--19478
41
16.9
43
74
15
305
38
21
25
15
1.92
18754--19295
128
4.3
126
83
6
583
37
21
25
15
1.92
19047--19288
80
2.9
87
81
9
236
39
21
24
15
1.91
19138--19344
80
2.5
79
85
9
247
38
21
24
15
1.92
19262--19479
47
4.6
47
80
9
187
38
22
24
15
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20093--20154
32
2.0
30
84
9
79
45
9
4
40
1.58
20302--20470
51
3.3
51
89
1
241
36
15
4
43
1.68
24652--24886
48
4.9
47
85
5
276
23
28
15
31
1.95
26785--26817
6
5.5
6
100
0
66
54
15
0
30
1.41

Tables:   1

The End!