Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009913.1 Corchorus capsularis cultivar CVL-1 contig09934, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36860

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1495--1521
6
4.5
6
100
0
54
55
14
0
29
1.40
1518--1552
13
2.7
13
90
0
52
62
8
8
20
1.49
6630--7861
436
2.8
436
87
3
1724
43
17
12
26
1.85
10573--10694
22
5.5
22
72
7
95
33
12
10
43
1.77
11137--11337
99
2.1
99
85
7
270
36
16
5
40
1.72
13155--13222
22
3.0
22
77
14
68
32
19
8
39
1.82
13250--13354
31
3.5
29
73
13
79
35
20
14
29
1.92
13672--13747
22
3.5
22
80
7
75
36
7
10
44
1.68
13823--13886
21
2.8
23
79
13
69
35
10
9
43
1.72
13961--14011
22
2.5
20
75
12
57
49
13
7
29
1.70
14047--14129
22
3.8
21
76
6
67
37
12
12
38
1.80
15408--15440
15
2.1
16
88
5
50
39
6
0
54
1.25
22627--22664
11
3.5
11
85
10
51
57
2
0
39
1.12
23877--23902
2
13.0
2
100
0
52
50
0
0
50
1.00
29128--29214
45
1.9
45
90
0
138
35
19
20
24
1.96
29268--29598
166
2.0
167
85
4
454
29
13
17
39
1.88
31392--31477
45
1.9
45
95
0
154
25
22
18
33
1.96
35401--35443
21
2.0
21
100
0
86
37
13
0
48
1.43
35553--35657
36
3.1
36
62
13
85
25
6
18
49
1.71

Tables:   1

The End!