Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009914.1 Corchorus capsularis cultivar CVL-1 contig09935, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32574

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4201--4233
17
2.0
17
88
5
50
54
0
0
45
0.99
4982--5035
16
3.4
16
75
10
65
37
31
7
24
1.83
4974--5035
32
1.9
32
93
0
106
38
32
8
20
1.82
14093--14184
3
30.0
3
78
18
84
34
3
0
61
1.12
14073--14160
43
2.1
44
82
16
107
34
6
1
57
1.32
16196--16260
31
2.1
31
94
0
112
40
21
15
23
1.91
18023--18148
27
4.6
27
70
5
74
43
3
7
45
1.50
17998--18164
41
4.0
42
94
2
302
42
4
7
46
1.50
17999--18163
83
2.0
83
98
0
321
43
4
7
45
1.51
18453--18490
11
3.5
11
89
10
51
39
0
2
57
1.12
21379--21426
23
2.1
23
96
0
87
31
18
16
33
1.94
21560--21710
31
5.2
31
71
13
113
35
25
21
17
1.95
22797--22829
12
2.6
13
85
9
50
69
18
0
12
1.18
25284--25308
12
2.1
12
100
0
50
36
24
8
32
1.84
25863--25910
10
4.7
10
78
12
53
33
12
0
54
1.38
25869--25936
35
2.0
34
85
2
91
33
11
0
54
1.37
26028--26323
109
2.7
109
90
4
441
37
11
1
49
1.49
27888--27912
13
1.9
13
100
0
50
24
20
16
40
1.91
31768--31839
31
2.4
31
86
4
94
27
9
18
44
1.81
32042--32099
30
1.9
30
89
0
89
43
10
17
29
1.82
32544--32574
2
15.5
2
100
0
62
51
0
0
48
1.00

Tables:   1

The End!