Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009916.1 Corchorus capsularis cultivar CVL-1 contig09937, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1722
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1315 original size:92 final size:92

Alignment explanation


    Indices: 1158--1392  Score: 443
    Period size: 92  Copynumber: 2.6  Consensus size: 92

       1148 GTACTATTTA

                                 * *                                         
       1158 CATTATTGGAGACAATTTCTGGATAGATTCTTCATGATAACTTTGCAGACCTTCATAATTTGGCT
          1 CATTATTGGAGACAATTTCTGCAGAGATTCTTCATGATAACTTTGCAGACCTTCATAATTTGGCT

                                       
       1223 TTCTCTTCATCCAATGAGTCAGCTTTG
         66 TTCTCTTCATCCAATGAGTCAGCTTTG

                                                                             
       1250 CATTATTGGAGACAATTTCTGCAGAGATTCTTCATGATAACTTTGCAGACCTTCATAATTTGGCT
          1 CATTATTGGAGACAATTTCTGCAGAGATTCTTCATGATAACTTTGCAGACCTTCATAATTTGGCT

                                       
       1315 TTCTCTTCATCCAATGAGTCAGCTTTG
         66 TTCTCTTCATCCAATGAGTCAGCTTTG

                            *                                  
       1342 CATTATTGGAGACAATATCTGCAGAGATTCTTCATGATAACTTTGCAGACC
          1 CATTATTGGAGACAATTTCTGCAGAGATTCTTCATGATAACTTTGCAGACC

       1393 ATTTTCTTTG


Statistics
Matches: 140,  Mismatches: 3, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  92  140  1.00

ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37


Consensus pattern (92 bp):   
CATTATTGGAGACAATTTCTGCAGAGATTCTTCATGATAACTTTGCAGACCTTCATAATTTGGCT
TTCTCTTCATCCAATGAGTCAGCTTTG
Done.