Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009918.1 Corchorus capsularis cultivar CVL-1 contig09939, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45562

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
861--984
23
5.5
23
81
3
121
38
12
7
41
1.71
859--985
45
2.8
44
83
6
148
37
13
7
40
1.74
594--1148
22
25.6
22
69
9
228
36
14
9
39
1.80
1014--1148
65
2.1
64
82
6
157
33
14
10
41
1.80
1117--1157
20
2.1
20
90
4
66
34
17
9
39
1.82
1250--1306
22
2.6
22
94
2
98
35
12
7
45
1.69
1331--1420
22
4.3
20
71
22
60
37
13
7
41
1.73
1381--1445
25
2.8
23
81
11
80
38
15
6
40
1.72
1504--1643
22
6.4
21
69
14
79
34
20
9
36
1.84
1544--1643
44
2.3
44
79
10
107
34
21
10
35
1.86
1679--1818
22
6.3
22
75
9
113
39
19
9
32
1.83
1982--2024
19
2.3
19
84
8
52
62
2
6
27
1.33
2337--2402
31
2.1
31
86
5
89
45
3
24
27
1.68
4964--4994
11
2.8
11
95
0
53
0
3
19
77
0.90
7748--7873
37
3.4
37
95
0
216
17
14
19
49
1.80
11818--11852
18
2.0
18
94
5
63
5
11
34
48
1.63
12874--12960
42
2.2
39
87
6
120
42
16
12
28
1.84
13057--13086
13
2.3
13
94
0
51
33
6
46
13
1.69
14694--14869
74
2.3
76
89
2
257
39
10
16
32
1.83
18677--18742
31
2.1
31
83
10
82
30
16
4
48
1.66
18752--18804
19
2.8
19
77
5
54
37
5
0
56
1.23
18831--18970
22
6.3
22
77
4
93
32
10
20
37
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19008--19330
22
14.5
21
67
18
104
39
10
15
35
1.81
19202--19266
21
2.8
24
81
13
82
44
7
9
38
1.65
19298--19360
30
2.1
30
85
5
83
46
9
6
38
1.62
19328--19382
22
2.5
22
90
0
83
43
9
9
38
1.68
19488--19554
19
3.5
19
87
2
89
44
10
19
25
1.82
19545--19797
22
11.7
22
69
11
103
41
7
12
37
1.72
19545--19752
44
4.9
43
72
16
139
41
8
12
37
1.74
19714--19798
23
3.7
23
79
4
84
42
5
12
38
1.68
19803--19863
22
2.8
21
75
5
59
39
11
11
37
1.78
20041--20152
38
2.9
38
100
0
224
33
17
13
34
1.89
20465--20517
21
2.5
21
87
3
70
39
15
11
33
1.83
25060--25097
16
2.3
17
86
4
51
7
13
0
78
0.94

Tables:   1

The End!