Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009919.1 Corchorus capsularis cultivar CVL-1 contig09940, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40122

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48--104
14
4.0
14
86
2
78
0
14
7
78
0.94
8421--8449
2
14.5
2
100
0
58
51
0
0
48
1.00
12294--12424
62
2.1
62
95
0
235
29
9
29
31
1.89
12867--12925
5
10.8
5
79
13
55
61
3
0
35
1.13
19229--19281
23
2.2
26
80
16
60
37
1
3
56
1.28
19775--19839
32
2.0
32
96
0
121
29
13
27
29
1.95
21996--22425
179
2.4
180
79
8
473
35
16
14
33
1.89
27927--27981
27
2.0
27
100
0
110
38
7
14
40
1.74
27932--28003
21
3.1
21
88
11
90
34
8
16
40
1.79
27932--28004
27
2.9
27
71
23
77
34
9
16
39
1.81
30196--30222
2
13.5
2
100
0
54
51
48
0
0
1.00
30869--30903
3
11.7
3
100
0
70
34
0
0
65
0.93
31038--31062
13
1.9
13
100
0
50
56
0
0
44
0.99
34029--34135
54
2.0
53
96
1
196
20
42
14
21
1.88
36079--36120
6
6.8
6
97
2
75
35
14
0
50
1.43
36257--36320
23
3.0
23
72
27
77
45
20
0
34
1.51
36264--36330
17
3.5
18
73
26
66
44
17
0
37
1.49
36375--36446
32
2.2
32
83
9
85
48
9
6
34
1.63

Tables:   1

The End!