Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009920.1 Corchorus capsularis cultivar CVL-1 contig09941, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61217

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9919--10149
117
2.0
114
90
2
363
29
13
15
41
1.86
16593--16618
2
13.0
2
100
0
52
50
0
0
50
1.00
16806--16846
20
2.0
21
85
4
57
21
19
21
36
1.95
17137--17343
108
1.9
107
82
6
258
30
8
14
46
1.74
19054--19151
36
2.7
36
100
0
196
31
12
20
35
1.89
24999--25083
43
2.0
43
95
0
152
35
11
11
41
1.78
32452--32890
84
5.2
83
84
1
482
15
30
11
41
1.83
34790--34827
11
3.5
11
85
10
51
57
2
0
39
1.12
35717--35820
53
2.0
52
92
1
172
27
12
14
45
1.81
38114--38220
54
2.0
55
84
1
144
34
16
27
21
1.95
38413--38452
21
1.9
21
89
0
62
25
17
25
32
1.97
38602--38634
17
1.9
17
93
0
57
30
6
33
30
1.82
38982--39333
156
2.3
155
78
9
369
35
19
15
30
1.92
40440--40532
34
2.8
34
91
1
143
34
9
39
16
1.81
40612--40657
2
24.5
2
78
12
53
45
2
0
52
1.13
40605--40651
19
2.3
20
89
7
69
40
0
2
57
1.11
46884--46915
14
2.2
15
94
5
57
37
0
62
0
0.95
47697--47723
12
2.2
12
100
0
54
18
59
14
7
1.58
54165--54226
26
2.3
27
84
13
76
35
19
22
22
1.96
57483--57517
2
17.5
2
100
0
70
48
0
0
51
1.00
59834--59885
26
2.0
26
88
7
79
25
53
15
5
1.63
59854--59885
17
1.9
17
93
6
57
25
56
15
3
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59923--60014
16
5.8
15
76
10
60
32
40
17
9
1.82
59922--60034
32
3.5
32
76
10
97
32
38
19
9
1.84
59970--60025
16
3.5
16
87
4
78
35
37
19
7
1.79
60178--60214
14
2.7
14
87
4
58
67
0
13
18
1.23
60602--60743
16
8.9
16
84
1
160
35
37
17
9
1.82
60595--60743
32
4.7
32
85
4
187
36
37
16
8
1.80
60567--60745
48
3.8
48
85
5
217
37
36
16
9
1.82
60565--60745
16
11.6
16
77
8
158
37
35
17
9
1.83

Tables:   1

The End!