Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009921.1 Corchorus capsularis cultivar CVL-1 contig09942, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17393

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
643--675
13
2.4
14
85
10
50
36
0
0
63
0.95
638--740
51
2.0
51
100
0
206
34
3
3
57
1.35
694--726
13
2.4
14
85
10
50
36
0
0
63
0.95
793--818
4
6.5
4
100
0
52
73
0
0
26
0.84
6690--6868
94
1.9
93
85
5
245
37
14
12
35
1.84
6998--7062
30
2.1
31
85
2
87
30
18
4
46
1.69
7199--7588
196
2.0
198
90
3
626
20
17
14
47
1.82
7640--7677
19
2.0
20
85
15
53
28
5
2
63
1.30
7258--7625
196
1.9
193
83
5
454
22
16
14
46
1.83
7842--7982
22
6.3
22
69
6
86
32
7
20
39
1.80
8018--8409
22
17.7
21
68
16
136
39
9
16
34
1.81
8515--8566
20
2.6
20
90
0
77
42
13
15
28
1.85
8578--8826
22
11.5
22
67
15
92
41
8
14
35
1.76
8701--8780
23
3.5
23
84
1
99
41
6
13
38
1.70
8973--9072
22
4.6
22
78
2
76
44
11
15
30
1.80
8923--9023
44
2.3
43
80
13
116
39
10
16
32
1.84
9918--10166
79
3.2
78
85
4
331
48
1
12
37
1.51
10254--10290
6
6.3
6
84
15
51
48
0
16
35
1.46
10256--10290
16
2.1
17
94
5
63
48
0
17
34
1.47

Tables:   1

The End!