Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009922.1 Corchorus capsularis cultivar CVL-1 contig09943, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27593

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
687--918
94
2.5
93
85
4
304
37
15
13
33
1.88
781--1066
148
1.9
148
86
0
401
38
15
14
32
1.87
602--1280
242
2.8
241
88
2
968
38
15
13
31
1.87
929--1159
94
2.5
92
88
2
336
38
15
15
30
1.88
1530--1578
26
1.9
26
84
12
66
55
0
0
44
0.99
1919--2198
149
1.9
148
88
5
422
41
13
12
32
1.83
2061--2383
94
3.4
93
87
2
423
39
13
14
32
1.85
3157--3216
26
2.3
26
80
5
68
31
10
16
41
1.81
3920--3965
22
2.1
22
84
8
58
52
13
8
26
1.69
11147--11208
31
2.0
31
100
0
124
19
16
22
41
1.89
11885--12205
147
2.2
143
81
7
353
36
16
14
32
1.88
11888--12205
72
4.4
72
83
7
331
36
16
14
32
1.89
12124--12277
65
2.4
64
72
7
157
33
15
14
35
1.89
12284--12654
72
5.3
72
76
9
311
37
17
13
30
1.89
12485--12598
61
1.9
60
85
5
158
37
20
8
33
1.83
25076--25100
7
3.6
7
100
0
50
12
12
0
76
1.04
27210--27241
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!