Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009923.1 Corchorus capsularis cultivar CVL-1 contig09944, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52808

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3797--3895
48
2.0
49
98
1
191
22
19
14
44
1.86
4983--5010
6
4.7
6
100
0
56
0
0
71
28
0.86
10951--11017
12
5.3
14
72
20
58
43
2
7
46
1.47
11152--11194
2
22.0
2
90
4
70
51
2
0
46
1.13
11281--11372
40
2.3
40
88
3
132
35
7
7
48
1.60
11592--11895
22
14.1
22
67
16
86
36
14
9
39
1.78
11650--11707
23
2.5
23
86
5
73
43
12
6
37
1.69
11696--11743
16
2.7
18
81
9
55
41
14
8
35
1.76
11731--11893
44
3.7
44
79
8
152
34
12
9
42
1.75
17033--17061
15
1.9
15
100
0
58
27
48
20
3
1.66
22041--22078
18
2.1
18
90
0
58
55
0
26
18
1.43
22637--22674
19
2.0
19
94
0
67
44
0
34
21
1.52
22983--23017
17
2.1
17
94
0
61
25
28
8
37
1.85
23024--23178
76
2.0
76
100
0
310
49
2
21
25
1.62
23634--23658
12
2.1
12
100
0
50
32
0
40
28
1.57
24203--24242
18
2.1
18
86
9
53
55
0
25
20
1.44
24828--24853
12
2.2
12
100
0
52
34
0
38
26
1.57
25158--25210
17
3.1
17
97
0
97
26
28
7
37
1.83
25216--25370
76
2.0
76
94
0
274
50
2
20
27
1.61
25792--25825
12
2.8
13
91
8
54
8
11
47
32
1.71
26607--26660
25
2.2
25
93
0
90
62
0
18
18
1.32
27244--27305
12
5.6
12
76
18
71
40
0
33
25
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27247--27284
19
2.0
19
94
0
67
44
0
34
21
1.52
27244--27311
24
3.0
23
79
16
81
39
0
33
26
1.57
27266--27311
12
3.8
11
83
16
56
39
0
34
26
1.57
27659--27810
76
2.0
76
96
0
277
48
2
20
28
1.63
28241--28272
12
2.6
13
90
9
50
6
12
46
34
1.67
28271--28307
12
3.1
12
92
0
65
35
0
37
27
1.57
28651--28805
76
2.0
76
96
0
283
49
2
21
26
1.63
27735--30797
925
3.4
903
84
8
3898
40
10
24
24
1.87
30978--31016
21
1.9
21
89
5
62
53
15
7
23
1.67
31620--31652
17
1.9
17
100
0
66
30
12
27
30
1.92
33017--33061
21
2.1
21
100
0
90
20
48
22
8
1.76
38962--38988
3
9.0
3
100
0
54
66
33
0
0
0.92
40816--40868
27
2.0
27
88
0
79
3
33
7
54
1.46
42103--42140
19
2.0
19
94
0
67
42
23
10
23
1.85
44803--44840
1
38.0
1
94
0
67
97
0
2
0
0.18
46982--47036
23
2.3
23
75
3
56
50
10
12
25
1.73

Tables:   1

The End!