Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009924.1 Corchorus capsularis cultivar CVL-1 contig09945, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11686
ACGTcount: A:0.29, C:0.25, G:0.24, T:0.22


Found at i:1215 original size:28 final size:28

Alignment explanation


    Indices: 1175--1230  Score: 112
    Period size: 28  Copynumber: 2.0  Consensus size: 28

       1165 ACTGCAATGG

                                        
       1175 TTAACAATTTCACTACCGACCGGATTAT
          1 TTAACAATTTCACTACCGACCGGATTAT

                                        
       1203 TTAACAATTTCACTACCGACCGGATTAT
          1 TTAACAATTTCACTACCGACCGGATTAT

       1231 AATCGACAGT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   28  1.00

ACGTcount: A:0.32, C:0.25, G:0.11, T:0.32


Consensus pattern (28 bp):   
TTAACAATTTCACTACCGACCGGATTAT

Found at i:9143 original size:21 final size:21

Alignment explanation


    Indices: 9117--9163  Score: 76
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       9107 GTCAGCCCGC

                          *      
       9117 CAAAATTCGAAATTTGAATTT
          1 CAAAATTCGAAATTCGAATTT

                   *             
       9138 CAAAATTTGAAATTCGAATTT
          1 CAAAATTCGAAATTCGAATTT

                 
       9159 CAAAA
          1 CAAAA

       9164 AAAAAAAAAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.47, C:0.11, G:0.09, T:0.34


Consensus pattern (21 bp):   
CAAAATTCGAAATTCGAATTT
Done.