Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009925.1 Corchorus capsularis cultivar CVL-1 contig09946, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85976

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--340
7
49.9
7
93
6
569
40
44
0
15
1.48
1--340
20
16.6
20
94
5
553
40
44
0
15
1.48
959--988
2
15.0
2
100
0
60
50
0
0
50
1.00
1666--1804
6
22.3
6
75
15
59
17
63
2
15
1.43
1760--1805
3
15.3
3
90
0
56
8
65
0
26
1.21
1749--1798
24
2.1
24
88
0
73
16
64
0
20
1.30
17584--17615
1
32.0
1
100
0
64
100
0
0
0
0.00
24275--24299
12
2.1
12
100
0
50
92
0
8
0
0.40
24259--24484
110
2.0
111
97
2
427
34
26
5
33
1.79
25927--26136
105
2.0
101
91
6
343
54
15
10
19
1.70
33501--33746
121
2.0
121
92
1
404
28
25
6
39
1.80
40212--40265
26
2.1
26
100
0
108
42
18
11
27
1.84
44213--44265
26
2.0
27
92
3
90
28
7
30
33
1.85
52859--52967
58
1.9
56
92
7
186
60
13
7
18
1.56
54493--54593
50
2.0
50
92
0
166
40
5
17
35
1.74
58490--58522
12
2.6
13
85
9
50
12
0
18
69
1.18
60626--60656
2
15.5
2
100
0
62
48
0
0
51
1.00
63181--63218
20
1.9
20
84
10
51
44
0
13
42
1.43
69467--69518
26
2.1
25
92
7
88
25
11
21
42
1.86
70344--70376
2
16.5
2
100
0
66
51
0
48
0
1.00
70591--70642
16
3.3
15
72
17
52
26
1
7
63
1.32
82253--82299
25
1.9
25
91
4
78
10
14
2
72
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82900--83046
79
1.9
79
85
2
206
27
10
21
41
1.85

Tables:   1

The End!