Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009926.1 Corchorus capsularis cultivar CVL-1 contig09947, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9284
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33


Found at i:1715 original size:24 final size:24

Alignment explanation


    Indices: 1669--1718  Score: 66
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       1659 CCGCCACCAC

                        **          
       1669 CATCATCTCCACCGCCTAGTAATT
          1 CATCATCTCCACAACCTAGTAATT

                                     
       1693 CATCATCTCCACAACCT-GTTAATT
          1 CATCATCTCCACAACCTAG-TAATT

              
       1717 CA
          1 CA

       1719 CCTCCACAAT


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  23    1  0.04
  24   22  0.96

ACGTcount: A:0.28, C:0.36, G:0.06, T:0.30


Consensus pattern (24 bp):   
CATCATCTCCACAACCTAGTAATT

Found at i:9140 original size:8 final size:8

Alignment explanation


    Indices: 9127--9159  Score: 57
    Period size: 8  Copynumber: 4.1  Consensus size: 8

       9117 CTTGCATAGC

                    
       9127 CATCCCAT
          1 CATCCCAT

                    
       9135 CATCCCAT
          1 CATCCCAT

                    
       9143 CATCCCAT
          1 CATCCCAT

            *       
       9151 GATCCCAT
          1 CATCCCAT

             
       9159 C
          1 C

       9160 CCATGGATGA


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   8   23  1.00

ACGTcount: A:0.24, C:0.48, G:0.03, T:0.24


Consensus pattern (8 bp):   
CATCCCAT

Done.