Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009935.1 Corchorus capsularis cultivar CVL-1 contig09956, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87145

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50--2378
332
7.0
332
80
5
2426
33
14
15
35
1.89
3283--3400
48
2.5
48
77
0
137
34
27
16
21
1.94
7378--7411
2
16.5
2
93
6
59
47
2
0
50
1.16
15767--15813
18
2.7
18
80
6
53
42
8
8
40
1.66
17532--17599
33
2.1
33
100
0
136
57
30
2
8
1.44
23748--23780
12
2.5
13
90
9
50
48
3
30
18
1.63
24467--24495
6
4.8
6
100
0
58
17
0
17
65
1.27
24453--24495
18
2.4
18
84
7
52
18
4
16
60
1.52
34068--34104
2
18.5
2
100
0
74
51
0
0
48
1.00
53014--53038
2
12.5
2
100
0
50
52
0
0
48
1.00
77275--77440
84
2.0
84
98
0
323
31
16
16
34
1.92
86121--86151
2
15.5
2
100
0
62
51
0
0
48
1.00

Tables:   1

The End!