Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009941.1 Corchorus capsularis cultivar CVL-1 contig09962, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89848

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11427--11504
41
1.9
41
91
0
129
26
14
17
41
1.88
11507--11541
13
2.7
13
86
0
52
28
8
45
17
1.77
12192--12218
3
9.0
3
100
0
54
33
0
0
66
0.92
12876--12952
31
2.5
31
79
12
86
35
11
19
33
1.88
37629--37778
75
2.0
75
98
0
291
44
14
10
30
1.78
40000--40158
86
1.8
86
85
5
223
18
25
22
33
1.96
41307--41415
29
3.7
29
78
3
101
16
29
17
36
1.92
41608--41681
29
2.5
30
76
8
89
39
16
27
17
1.91
45707--45732
2
13.0
2
100
0
52
50
0
0
50
1.00
51290--51382
46
2.0
46
100
0
186
40
15
12
31
1.84
52485--52512
2
14.0
2
100
0
56
50
0
0
50
1.00
60269--60321
18
2.9
18
80
0
61
18
52
13
15
1.74
67755--68052
109
2.7
109
90
4
436
38
10
1
49
1.47
79037--79074
19
2.0
19
89
0
58
39
13
15
31
1.86
81921--81946
1
26.0
1
100
0
52
100
0
0
0
0.00
84514--84557
14
2.9
15
83
13
54
15
29
2
52
1.55
84565--84635
33
2.2
33
89
5
108
19
43
26
9
1.82
84640--84744
32
3.2
32
76
9
88
10
34
39
16
1.83

Tables:   1

The End!