Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009945.1 Corchorus capsularis cultivar CVL-1 contig09966, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132680

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12388--12419
15
2.1
15
94
0
55
21
12
6
59
1.55
15365--15438
29
2.5
29
82
6
87
20
20
16
43
1.88
15383--15440
29
2.0
29
89
3
89
22
22
13
41
1.89
16634--16688
26
2.3
23
85
14
76
41
16
7
34
1.76
16642--16694
26
2.0
26
100
0
106
41
15
7
35
1.75
27952--28253
151
2.0
151
99
0
595
45
10
9
34
1.71
34332--34529
3
67.0
3
86
8
255
62
1
1
34
1.14
39439--39481
21
2.0
21
90
0
68
53
16
16
13
1.73
47967--48233
89
3.0
89
98
0
516
28
8
21
40
1.84
54005--54042
17
2.3
17
86
13
53
10
5
39
44
1.61
59166--59234
1
69.0
1
76
0
66
88
11
0
0
0.52
59166--59228
14
4.5
14
84
4
83
88
11
0
0
0.50
59168--59237
6
12.3
6
86
8
94
87
12
0
0
0.55
59169--59237
21
3.1
23
85
10
99
86
13
0
0
0.56
60118--60165
4
12.0
4
95
0
51
50
10
0
39
1.37
60118--60164
8
5.9
8
92
0
58
51
10
0
38
1.37
60118--60160
12
3.6
12
87
0
59
51
11
0
37
1.39
73656--73714
12
4.7
12
80
12
55
35
50
13
0
1.42
80344--80481
71
2.0
71
92
5
239
47
17
7
27
1.73
82420--82519
42
2.4
42
96
1
182
19
10
42
29
1.83
98309--98388
39
2.1
39
90
0
124
10
28
15
46
1.77
103705--103747
17
2.4
17
81
18
52
37
13
9
39
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
103705--103747
16
2.8
16
86
13
63
37
13
9
39
1.78
105214--105249
6
6.0
6
96
0
54
0
22
11
66
1.22
115084--115117
17
2.0
17
100
0
68
23
11
23
41
1.87
115357--115428
27
2.8
25
87
6
90
47
2
1
48
1.25
117238--117289
18
2.5
21
73
26
56
38
5
3
51
1.44
117239--117280
18
2.2
20
87
12
61
40
7
2
50
1.43
117895--117940
13
3.7
12
83
11
56
69
15
15
0
1.19
120490--120523
13
2.6
13
100
0
68
38
8
5
47
1.59
121048--121078
15
2.1
15
100
0
62
0
25
6
67
1.14
123016--123070
24
2.3
24
96
0
101
47
3
0
49
1.19
131370--131402
13
2.5
13
90
9
50
0
0
15
84
0.61

Tables:   1

The End!